Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21m07
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo...    61   1e-10
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    30   0.25 
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    28   1.0  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    27   2.3  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    26   5.3  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   5.3  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    26   5.3  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    25   7.1  
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me...    25   7.1  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   9.3  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   9.3  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    25   9.3  
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz...    25   9.3  
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.3  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.3  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    25   9.3  

>SPBC582.07c |rpn7||19S proteasome regulatory subunit
           Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 409

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 42/173 (24%), Positives = 88/173 (50%), Gaps = 15/173 (8%)
 Frame = +3

Query: 171 LSAEGKTPEYMALAGIKFKLSLPEFKDNIQLK-EQLLNGIKAGHMAPYYKEVCND----L 335
           ++ + +T   + ++   F+LS P  ++  Q   + L + I+   +AP YK +  +     
Sbjct: 13  MTEKARTVSDLTISQAIFELSSPFLENKSQKALDTLFSAIRDHDLAPLYKYLSENPKTSA 72

Query: 336 GWTFDQKLYDDMTKENQDRLSKFE---EDDSE-------TPVWQDRLDYLCSVGDKETAT 485
              FD    + M K+N+++L++F+   ED  E           +++ DY  ++ D+E   
Sbjct: 73  SIDFDSNFLNSMIKKNEEKLAEFDKAIEDAQELNGEHEILEAMKNKADYYTNICDRERGV 132

Query: 486 ALATSKYEDSTLTTNRRLDAIFALFRIAYFHGCNVKEMGKAINKAHELVDKGG 644
            L    +E +TL T  ++D +F+  R+AY +  +++ +G+ + K   L++KGG
Sbjct: 133 QLCDETFERATL-TGMKIDVLFSKIRLAYVY-ADMRVVGQLLEKLKPLIEKGG 183


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
 Frame = +3

Query: 153 NQLKMELSAEGKTPEYMALAG-IKFKLSLPEFKDNIQL---KEQLLNGIKAGHMAPYYKE 320
           N LK +   E    E   + G ++ K  L    +N++    K + L   +A   A   KE
Sbjct: 115 NNLKTQKQIEDLKKEKEEMEGSLQGKEKLEREVENLRKELDKYKDLVETEAEKRAAITKE 174

Query: 321 VCNDLGWTFDQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGDKETA 482
            C +  W   QKLY DM +EN   + K      E    Q  LD+       E+A
Sbjct: 175 EC-EKSWLEQQKLYKDMEQENASTIQKLTSKIRELQASQ--LDHDLQASQNESA 225


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 5/155 (3%)
 Frame = +3

Query: 165 MELSAEGKTPEYMALAGIKFKLSLPEFKDNIQLKEQLLNGIKAGHMAPYYKEVCNDL--- 335
           + LS++ K+    A     FK  L  F+ + +L E+L N       +P Y+    +    
Sbjct: 521 VSLSSQNKSAP-TAKKNNSFKPKL--FRRSRELSEKLCNNWSERVKSPSYQLKVREREKL 577

Query: 336 -GWTFDQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGDKETATALATSKYED 512
             W   +K+ D +       +S        T V Q  LD+  S G+K+  T + T     
Sbjct: 578 PAWESRRKIMDAIQHSQVVVISGETGSGKSTQVVQFILDHYLSSGEKDLQTVVCTQP--- 634

Query: 513 STLTTNRRLDAIFALFRIAYFHGCNV-KEMGKAIN 614
                 RR+ AI    R+A+     V KE+G +++
Sbjct: 635 ------RRISAISLAERVAFERDTTVGKEVGYSVH 663


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 178 RREKHLNTWHWPESNSNSVYL 240
           R E   +TW WP  N NSV L
Sbjct: 275 RDEIGSSTWSWPSQNCNSVLL 295


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1188

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 309  YYKEVCNDLGWTFDQKLYDDMTKENQDRLSKFEEDDS 419
            Y K++ N L    DQ+   D ++E     SKFE DDS
Sbjct: 991  YVKDMKNPLA---DQRASLDESRETTTASSKFESDDS 1024


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 363  DDMTKENQDRLSKFEEDDSETPVWQDRLDY-LCSVGDKETAT 485
            D+   +NQ    ++E++D+ +  ++D LDY    VG+ ++ T
Sbjct: 1932 DEEDLDNQGEEFEWEDEDNASSGYEDELDYNEDEVGENDSTT 1973


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 171 LSAEGKTPEYMAL-AGIKFKLSLPEFKDNIQLKEQLLNGIKAGHMAP 308
           +S +GK  E +AL  G+   LSL EF+  + L E L + I A +  P
Sbjct: 229 VSIDGKEFERVALNEGVSVTLSLREFRAAVILAEALGSSICAYYGVP 275


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 363 DDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVG 467
           D     N   +S  EEDDS+  V  D+L+   SVG
Sbjct: 95  DHKNLNNTKEISLNEEDDSDDSVNSDKLENEGSVG 129


>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 318 LYNKEPCVQPLFHSITAP 265
           LY + PC+ PL+H+   P
Sbjct: 11  LYRENPCLLPLYHATRDP 28


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1429

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/55 (21%), Positives = 24/55 (43%)
 Frame = +3

Query: 336  GWTFDQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGDKETATALATS 500
            G     K    +  +NQD   K +     +P W + +    S+GD+   +A+ ++
Sbjct: 1338 GKNMPHKTIKIIVTDNQDHSFKTKSRKGPSPSWNEEIPVKWSLGDELRISAVTSN 1392


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 617 LIDSFSHFLHITSMEISNSEQSKYSIEPPV 528
           +ID F+ F+     E    ++ KY   PP+
Sbjct: 168 VIDEFADFIEQDEFEDEERQEEKYETGPPI 197


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 414 DSETPVWQDRLDYLCSVGDKETATALA 494
           D   P++Q  LDY  + GD   A AL+
Sbjct: 542 DEAKPIYQKWLDYESNYGDLNAAIALS 568


>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +1

Query: 421 KHPFGKIGLITCVQ--LETKKQL 483
           +HP+G +G + CV+   E +KQL
Sbjct: 164 EHPYGGLGFVGCVEEIYEQEKQL 186


>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 306 PYYKEVCNDLGWTFDQKLYDDMTKENQDRLSKFE 407
           P   E   D+ W+F ++      K+ Q  LSKF+
Sbjct: 137 PMTAETLGDISWSFSRRENMKFEKDQQYILSKFK 170


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 301 WLLIIKRCAMTLAGLLTRSCMMT*QKKIKTGYLNLK 408
           WL  IK+ A+ L G +   C     K + T Y++L+
Sbjct: 502 WLDHIKKVAICLYGYVLDPCRAMDPKVVSTSYVSLQ 537


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 339 WTFDQKLYDDMTKENQDRLSKFEEDD 416
           W  D +LY+   +E ++ LSK  +DD
Sbjct: 290 WKVDFRLYEVFCEETKNDLSKLLKDD 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,200
Number of Sequences: 5004
Number of extensions: 47703
Number of successful extensions: 144
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)