Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21m06
         (277 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo...    24   4.6  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    24   4.6  
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    23   6.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    23   8.0  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     23   8.0  

>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 149 FSLSSTPERAPKVRSFCIFQPDLPCTKAKL 60
           FS  + PE  P +  FC   P++    AK+
Sbjct: 66  FSTRTIPEERPLIIQFCGNDPEIMLKAAKI 95


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 2   KNYIIAGFSLFLLVVTFAVKALLSYTASLAE 94
           K+YI  G   +L V   ++++L  YTASL E
Sbjct: 278 KSYIFLGDPRYLEVWQKSLESLRHYTASLNE 308


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 113 PLVLSPGSMKEKKMISNENI 172
           PLV   GS+K+   I+NE I
Sbjct: 153 PLVKKTGSLKDHLQIANEGI 172


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 134  SMKEKKMISNENILANLLRVKRSI 205
            S K+KK++S  NIL   LR+  S+
Sbjct: 2602 SRKDKKILSPPNILDENLRLAASL 2625


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 186 YASKGLFRMXLLCLRTT*ENNLRL*SRAWI 275
           Y+ K + R  +L  R   ENNLR+ + AWI
Sbjct: 18  YSEKEISR--ILSTRDPKENNLRMQAFAWI 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,101,117
Number of Sequences: 5004
Number of extensions: 18670
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)