Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21m06
         (277 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68118-1|CAA92186.2| 1014|Caenorhabditis elegans Hypothetical pr...    28   0.82 
AF235027-1|AAF68380.1| 1017|Caenorhabditis elegans guanylyl cycl...    28   0.82 
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    28   1.1  
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    28   1.1  
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    28   1.1  
Z75952-1|CAB00092.1|  148|Caenorhabditis elegans Hypothetical pr...    27   2.5  
L11148-1|AAA28104.1|  237|Caenorhabditis elegans lin-31 protein ...    26   4.4  
AF016669-4|AAB66096.1|  237|Caenorhabditis elegans Abnormal cell...    26   4.4  
AF038618-1|AAB92068.2|  386|Caenorhabditis elegans Hypothetical ...    25   5.8  
Z83744-4|CAB06040.4|  735|Caenorhabditis elegans Hypothetical pr...    25   7.7  
Z83316-2|CAB05891.1|  226|Caenorhabditis elegans Hypothetical pr...    25   7.7  
Z81459-1|CAB03827.3|  731|Caenorhabditis elegans Hypothetical pr...    25   7.7  
Z79604-6|CAB97241.2|  731|Caenorhabditis elegans Hypothetical pr...    25   7.7  
Z75544-3|CAA99879.1|  212|Caenorhabditis elegans Hypothetical pr...    25   7.7  
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr...    25   7.7  
AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase ...    25   7.7  
AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered cut...    25   7.7  
AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical...    25   7.7  

>Z68118-1|CAA92186.2| 1014|Caenorhabditis elegans Hypothetical
           protein R01E6.1 protein.
          Length = 1014

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +2

Query: 116 LVLSPGSMKEKKMISNENILANLLRVKRSISYXTIMFANDMREQFKTMIKSMD 274
           L++ P S +   ++  +    N L +KRS     I F ND+ +QF T+IK  D
Sbjct: 816 LIMPPRSYESATVMFVQICDFNAL-MKRSSPEQVIAFLNDIYDQFDTVIKRHD 867


>AF235027-1|AAF68380.1| 1017|Caenorhabditis elegans guanylyl cyclase
           protein.
          Length = 1017

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +2

Query: 116 LVLSPGSMKEKKMISNENILANLLRVKRSISYXTIMFANDMREQFKTMIKSMD 274
           L++ P S +   ++  +    N L +KRS     I F ND+ +QF T+IK  D
Sbjct: 819 LIMPPRSYESATVMFVQICDFNAL-MKRSSPEQVIAFLNDIYDQFDTVIKRHD 870


>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
            protein 104, isoforma protein.
          Length = 1584

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 104  RSEPLVLSPGSMKEKKMISNENILANLLRVKRSISYXTIMFAN 232
            RS  L+    S  ++ + SN++I+ NL  +KRS+S   I+  N
Sbjct: 1404 RSSDLLCRQKSKSDQNLASNDDIVDNLGGMKRSLSGSRILQLN 1446


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
            protein 104, isoformb protein.
          Length = 1628

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 104  RSEPLVLSPGSMKEKKMISNENILANLLRVKRSISYXTIMFAN 232
            RS  L+    S  ++ + SN++I+ NL  +KRS+S   I+  N
Sbjct: 1448 RSSDLLCRQKSKSDQNLASNDDIVDNLGGMKRSLSGSRILQLN 1490


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
            protein protein.
          Length = 1584

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 104  RSEPLVLSPGSMKEKKMISNENILANLLRVKRSISYXTIMFAN 232
            RS  L+    S  ++ + SN++I+ NL  +KRS+S   I+  N
Sbjct: 1404 RSSDLLCRQKSKSDQNLASNDDIVDNLGGMKRSLSGSRILQLN 1446


>Z75952-1|CAB00092.1|  148|Caenorhabditis elegans Hypothetical
           protein F29D10.1 protein.
          Length = 148

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 8   YIIAGFSLFLLVVTFAVKALLSYTASLAEIC 100
           +++   +  L  +TFA+  LLS++ SL  IC
Sbjct: 11  FVLCKITFTLFRITFAIIVLLSFSFSLLVIC 41


>L11148-1|AAA28104.1|  237|Caenorhabditis elegans lin-31 protein
           protein.
          Length = 237

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 131 PERAPKVRSFCIFQPDLPCTKAKLL 57
           P   P + +FC+F P +  TK+ LL
Sbjct: 154 PNLPPSLPNFCLFPPGMDPTKSLLL 178


>AF016669-4|AAB66096.1|  237|Caenorhabditis elegans Abnormal cell
           lineage protein 31 protein.
          Length = 237

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 131 PERAPKVRSFCIFQPDLPCTKAKLL 57
           P   P + +FC+F P +  TK+ LL
Sbjct: 154 PNLPPSLPNFCLFPPGMDPTKSLLL 178


>AF038618-1|AAB92068.2|  386|Caenorhabditis elegans Hypothetical
           protein F42G8.9 protein.
          Length = 386

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +2

Query: 32  FLLVVTFAVKALLSYTASLAEICRRSEPLVLSPGSMKEKKMISNENILANLLRVKRSISY 211
           FL+V+ +++KA      SLA +   S       G     K+I+NE    +L     S   
Sbjct: 8   FLIVLVYSIKA-----QSLANVTEMSRKKCWEAGKYVSNKIIANETNDLSLKFANISTDG 62

Query: 212 XTIMFAN 232
            TI F N
Sbjct: 63  KTIDFLN 69


>Z83744-4|CAB06040.4|  735|Caenorhabditis elegans Hypothetical
           protein C06A12.4 protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +2

Query: 89  AEICRRSEPLVLSPGSMKEKKMISNENILANLLRVKRSISYXTIMFANDMREQFKTMIKS 268
           A I +  +  V++P        +    I   ++ +KR      I F ND+ +QF T+IK 
Sbjct: 517 ASIAKDLKNGVIAPARSYASATVMFVQICDFIVILKRRPPKEVIGFLNDIFDQFDTVIKR 576

Query: 269 MD 274
            D
Sbjct: 577 HD 578


>Z83316-2|CAB05891.1|  226|Caenorhabditis elegans Hypothetical
           protein B0379.2 protein.
          Length = 226

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 99  HISARLAVYESKAFTAKVTTNKNREN 22
           H+S R+    ++ F  +V T + REN
Sbjct: 172 HLSRRIGAIRAEGFEVRVNTRQAREN 197


>Z81459-1|CAB03827.3|  731|Caenorhabditis elegans Hypothetical
           protein C03H12.1 protein.
          Length = 731

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 2   KNYIIAGFSLFLLVVTFAVKALLSYTASLAEICRRSEPLVLSPGSMK 142
           KN I+    + LLV T A+  ++    +L  +   S PLV+S G+ K
Sbjct: 75  KNRILRDCGV-LLVATAALAIMIYLLLTLLGLSMPSRPLVVSKGAAK 120


>Z79604-6|CAB97241.2|  731|Caenorhabditis elegans Hypothetical
           protein C03H12.1 protein.
          Length = 731

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 2   KNYIIAGFSLFLLVVTFAVKALLSYTASLAEICRRSEPLVLSPGSMK 142
           KN I+    + LLV T A+  ++    +L  +   S PLV+S G+ K
Sbjct: 75  KNRILRDCGV-LLVATAALAIMIYLLLTLLGLSMPSRPLVVSKGAAK 120


>Z75544-3|CAA99879.1|  212|Caenorhabditis elegans Hypothetical
           protein K02A11.2 protein.
          Length = 212

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 99  HISARLAVYESKAFTAKVTTNKNREN 22
           H+S R+    ++ F  +V T + REN
Sbjct: 161 HLSRRIGAIRAEGFEVRVNTRQAREN 186


>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
            T13H2.5a protein.
          Length = 2471

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 95   FQPDLPCTKAKLLPRKLRPIRTERTQQL 12
            F PD PC+ A+   R+L   R  + QQ+
Sbjct: 939  FDPDEPCSSAQAAQRELIIERVGKEQQI 966


>AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase
           protein.
          Length = 1497

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 109 RTFGALSGVDEREKNDFKRKHTSQFATRQKVY 204
           RTFG      E    DF +KHT++    +++Y
Sbjct: 435 RTFGLAPKTWETMNEDFYKKHTAKVEKLKELY 466


>AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered
           cuticle protein 3 protein.
          Length = 1497

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 109 RTFGALSGVDEREKNDFKRKHTSQFATRQKVY 204
           RTFG      E    DF +KHT++    +++Y
Sbjct: 435 RTFGLAPKTWETMNEDFYKKHTAKVEKLKELY 466


>AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical
           protein F53G12.3 protein.
          Length = 1503

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 109 RTFGALSGVDEREKNDFKRKHTSQFATRQKVY 204
           RTFG      E    DF +KHT++    +++Y
Sbjct: 445 RTFGLAPKTWETMNEDFYKKHTAKVEKLKELY 476


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,990,025
Number of Sequences: 27780
Number of extensions: 103253
Number of successful extensions: 228
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)