Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21m06
         (277 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              21   2.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   2.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   2.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   4.9  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              20   6.5  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              20   6.5  

>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 6/12 (50%), Positives = 12/12 (100%)
 Frame = +1

Query: 127 SGVDEREKNDFK 162
           SG+DE++++DF+
Sbjct: 37  SGIDEKKEDDFR 48


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +2

Query: 23  FSLFLLVVTF---AVKALLSYTASLAEICRRSE 112
           +SLF +++ +    V  + +YT+ L EI RRS+
Sbjct: 204 YSLFGMIMMYWFPLVVIIYTYTSILLEIRRRSK 236


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 191 RVANWLVCFRLKSFFSLSSTPERAPKVRSFCIFQPDLP 78
           +VAN L  FR+      S++PE + K R F  F   +P
Sbjct: 226 QVANLLRLFRIPLVSFFSTSPELSNKQR-FEYFTRTIP 262


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 41  VVTFAVKALLSYTASLAEICRRSEPLVLSPGSMKEKKMISN 163
           + +  +++L   T  L  I   ++PLV++P     +  ISN
Sbjct: 145 ICSMMIESLSHTTQDLVFIWNMTDPLVVNPEIELPQLDISN 185


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 258 IVLNCSLMSFANIIVSY 208
           +V  CS++S ANI + +
Sbjct: 100 LVAECSVISDANIYIRF 116


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 258 IVLNCSLMSFANIIVSY 208
           +V  CS++S ANI + +
Sbjct: 100 LVAECSVISDANIYIRF 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,704
Number of Sequences: 438
Number of extensions: 1207
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5388717
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)