Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21m04
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    26   5.5  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   7.2  

>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = -2

Query: 575 KNVC--FEH*QHSDKEIGPKYYFLLESLLNA-FGTDD 474
           +N+C  F+H  HSD+++  +Y  L  ++L A FG ++
Sbjct: 274 ENLCRYFDHIMHSDEKVSYQYALLNLAMLQADFGCNE 310


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +3

Query: 243 LDCIPNIPVVILLFNNVSSHSSTCLLKRLASRSLSTQVAHIRRSSASPSKCDNWK 407
           L C+P  P ++ +   +S      L+  L S  LS    HI     + S+  NW+
Sbjct: 399 LHCLPWTPFLVQVVA-ISGFGGASLMIALISDFLSVMTIHIHLLYLASSRLYNWQ 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,608,917
Number of Sequences: 5004
Number of extensions: 51714
Number of successful extensions: 118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)