Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21m02
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0334 - 20341186-20341422,20341509-20341569,20341652-203417...    28   3.5  
02_04_0398 - 22598895-22599100,22599865-22599943                       28   4.7  
01_06_1609 + 38621264-38621386,38621521-38621578,38621778-386220...    28   4.7  
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481...    27   6.2  
11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389           27   8.2  
08_02_0218 - 14405739-14406096,14406322-14406326                       27   8.2  
05_06_0147 + 25986259-25987701                                         27   8.2  
02_01_0726 + 5440341-5440661,5441574-5441620,5442917-5442977,544...    27   8.2  

>05_04_0334 -
           20341186-20341422,20341509-20341569,20341652-20341719,
           20341800-20342009,20342714-20342754,20342909-20342958,
           20343069-20343157,20343233-20343307,20343498-20343598,
           20343758-20343812,20343909-20344025,20344672-20344892,
           20345525-20345582,20345706-20345822
          Length = 499

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 1   DFHRFPTSVIQPDRRVTVKCEWNLFNTIVNVYILRNIPG 117
           DFH++   V++ D +  V   W L+  +V +++L N+ G
Sbjct: 258 DFHKYMMRVLESDFKKVVGISWYLWVFVV-IFLLLNVNG 295


>02_04_0398 - 22598895-22599100,22599865-22599943
          Length = 94

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = +2

Query: 299 GGSRESGCCSYVIHW-ECLSC 358
           GG    GCC +  HW ECL C
Sbjct: 73  GGHCRWGCCGHRNHWGECLRC 93


>01_06_1609 +
           38621264-38621386,38621521-38621578,38621778-38622013,
           38622536-38622652,38622690-38622798,38622973-38623064,
           38623191-38623265,38623333-38623421,38623576-38623625,
           38623830-38623870,38623963-38624172,38624278-38624345,
           38624434-38624494,38624607-38624840
          Length = 520

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 1   DFHRFPTSVIQPDRRVTVKCEWNLFNTIVNVYILRNIPG 117
           DFHR+    ++ D +  V   W L+   V +++L N+ G
Sbjct: 280 DFHRYMVRALEADFKKVVGISWYLW-IFVMIFLLLNVNG 317


>12_02_0616 -
           21246374-21246462,21246605-21247702,21247800-21248110,
           21248550-21249251,21252802-21252912,21253396-21253481,
           21253753-21253862,21254085-21254236,21254656-21254765
          Length = 922

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 117 NCHTRPKQHNRYIYCIKLNKNISTDMGNACAAC 215
           +CH      ++ + C+ L ++I  D    CAAC
Sbjct: 384 SCHIECALQHQKVGCVDLGQSIQLDGNYCCAAC 416


>11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389
          Length = 1024

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 170 QLNTVDIAVVLFRSCVTIP-GIFLKIYTFTIVLNKFHSH 57
           +LN +DI++  F   V    G   K+    + LNKFH+H
Sbjct: 289 KLNLIDISINSFTGVVPRSIGKLTKLSWLNLELNKFHAH 327


>08_02_0218 - 14405739-14406096,14406322-14406326
          Length = 120

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 280 SRVNNHKPFPVHRTTLAIPLTRQAAHALPMSVEMFLFNL 164
           +R+N+     +  T  A+PL+  A   +P+S+   LF+L
Sbjct: 17  TRINSEVDLTLRMTNYALPLSVGAPDLIPLSLTSSLFSL 55


>05_06_0147 + 25986259-25987701
          Length = 480

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -3

Query: 421 HILPLVYHALIILEVACAIVLAAETFPVN--DIXXXXXXXXXXXTVLNPSRVNNHKPFP 251
           H++P+V  A ++L    A+V+A  T P +  D               NPS   +H P P
Sbjct: 19  HLIPMVELAKLLLRRGLAVVIAVPTPPASTADFFSSSAPAVDRMAAANPSISFHHLPPP 77


>02_01_0726 +
           5440341-5440661,5441574-5441620,5442917-5442977,
           5442978-5443035,5443303-5443463,5443692-5443808,
           5443888-5443989,5444834-5444908,5444996-5445084,
           5445171-5445220,5445562-5445641,5445744-5445953,
           5446103-5446170,5446363-5446423,5446719-5447081
          Length = 620

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 1   DFHRFPTSVIQPDRRVTVKCEWNLFNTIVNVYILRNIPG 117
           DFH++    ++ D +  V   W L+  ++ V++L NI G
Sbjct: 324 DFHKYMVRALEHDFKEVVGISWYLWLFVI-VFLLLNING 361


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,735,168
Number of Sequences: 37544
Number of extensions: 220031
Number of successful extensions: 432
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)