Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21l17
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   3.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.6  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 408 KPTVRERNAAMFNNQLMSDITFIVGAP 488
           +PTV++      N QL SD+    G+P
Sbjct: 252 EPTVQQHQPVTVNRQLNSDVQPGHGSP 278


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 34  SLSKSRI*CLEFVVYYYKIKRDSRSQCR 117
           SLS   I C+  V  YY I +  R++ R
Sbjct: 348 SLSSFYIPCIIMVFLYYNIFKALRNRAR 375


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 378 RYQEVLANSLATWSHLMTH 322
           RY+E  +N    W H  TH
Sbjct: 178 RYKEEESNENYNWEHKETH 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,689
Number of Sequences: 438
Number of extensions: 3298
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)