Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21l16
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    31   0.14 
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    27   2.3  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    26   4.0  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    25   9.3  

>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
 Frame = +3

Query: 342 MSVLPMLNYALFKTVP-------HHIMGNLTLAASMIYLSCLHLHRQIYHTADYTLXI 494
           +S++P+L +ALF ++          I  +L L+A  +Y+ C H+H Q+ +     L +
Sbjct: 324 LSIIPIL-FALFYSISGSTLHSFRSIKSHLVLSALYLYIGCFHMHTQVLNRMSSALPL 380


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 317 PIDLASHTHVRASNVKLCSVQDCPSSHNGEPNSGSFH 427
           PID+   T++    + LC   D  +SH+G  NS   H
Sbjct: 542 PIDIIIATNMAGMTIVLCVDYDLGNSHHGFRNSKFGH 578


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 261 LFVLGIFMLSWSTQMY*INYVLVMVIGI 178
           +F  GIF LSWS     +N+V+  + G+
Sbjct: 456 MFPAGIFWLSWSGHYSYVNWVVPALSGL 483


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 318 GSPILEERNKKK*LPS**SLFVLGIFMLSWSTQMY*INYVLVMVIGIL 175
           G P+ E R     + S   LF  GIF L+WS     +++++  + G+L
Sbjct: 400 GKPVPEARLPPMMIGS--VLFPAGIFWLAWSGYYTHVHWIVPTLSGLL 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,513
Number of Sequences: 5004
Number of extensions: 45503
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)