Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21l16
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0126 - 18391879-18391937,18392021-18392102,18392508-183926...    29   3.1  
10_08_0781 + 20509033-20509714,20510048-20510191,20510604-205107...    28   4.1  
06_03_1072 + 27365834-27365945,27366360-27366464,27366844-273669...    28   4.1  
10_07_0071 - 12597668-12597784,12597966-12598166,12598804-12599601     27   7.1  
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502...    27   7.1  
05_02_0080 + 6425343-6425556,6425613-6425857                           27   9.4  

>01_05_0126 -
           18391879-18391937,18392021-18392102,18392508-18392667,
           18392739-18392807,18392850-18392992,18393069-18393203,
           18393283-18393341,18394090-18394187,18394347-18394510,
           18394586-18394647,18394803-18394977,18396331-18396588,
           18396694-18396841,18398458-18398813
          Length = 655

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 453 VNANTKDISWKLPELGSPLCDEGQS*TEHNLTLEARTCVWL 331
           VN NT  +  K    G P  ++G+  T  ++ L  RTC W+
Sbjct: 243 VNGNTPILDIKT---GKPYVEDGRQWTARDIGLTHRTCAWM 280


>10_08_0781 +
           20509033-20509714,20510048-20510191,20510604-20510719,
           20511356-20511520,20511822-20512043,20512613-20512735
          Length = 483

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 34  LCT*T*NVALYYKKTVDHSN--CVENVIKLIERKKIPCHETQTSVLLTI*NTYHHNKYII 207
           LCT       Y  KT+  SN  CV ++  +    +I  H +    ++TI +TY   + + 
Sbjct: 89  LCTEISTGCQYACKTILKSNLRCVSDIEDVRREIQIMHHLSGQKNIVTIKDTYEDEQAVH 148

Query: 208 YLIHLCAPG 234
            ++ LCA G
Sbjct: 149 IVMELCAGG 157


>06_03_1072 +
           27365834-27365945,27366360-27366464,27366844-27366929,
           27367445-27367631,27368031-27368142,27368235-27368337,
           27368424-27368469,27368670-27368708,27368803-27368959,
           27369031-27369133,27369337-27369453,27369880-27369957,
           27370044-27370145,27370252-27370345,27370432-27370542,
           27370643-27370707,27370949-27371097,27371349-27371581,
           27371778-27371908,27372016-27372126,27372210-27372326
          Length = 785

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -1

Query: 232 LEHTNVLNKLCTCYGDRYSKL 170
           L+H+N +N +CT YG +YSK+
Sbjct: 332 LKHSNEIN-VCTIYGQQYSKV 351


>10_07_0071 - 12597668-12597784,12597966-12598166,12598804-12599601
          Length = 371

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +2

Query: 296 LSSRIGLPIDLASHTHVRASNVKLCSV 376
           L++ +G+ I +A  +HVR  N+K+C++
Sbjct: 151 LNNLLGISICIAFVSHVRLPNIKICAL 177


>07_03_1575 -
           27848977-27849095,27849254-27849302,27850270-27850287,
           27850798-27851786,27852119-27852733,27852893-27852921,
           27853990-27854453,27854530-27854654,27854743-27855025,
           27855112-27856102,27856965-27857576,27857666-27858630
          Length = 1752

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 247 HFYVILEHTNVLNKLCTCYGDRYSKLLTKRLFVFRGT 137
           H+Y I +H ++ N L TC+   YS  +T  + +F GT
Sbjct: 540 HYYGIFDHHSLFNVLRTCH-PSYSS-ITNMISLFWGT 574


>05_02_0080 + 6425343-6425556,6425613-6425857
          Length = 152

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 335 HTHVRASNVKLCSVQDCPSSHNGEPNSGSFHDISFVFA 448
           H HV  S + +CS+  C        N GS    +F+FA
Sbjct: 53  HGHVAGSWLTVCSLVQCLGGIGNNINKGSLVIATFLFA 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,312,455
Number of Sequences: 37544
Number of extensions: 263247
Number of successful extensions: 473
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)