Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21l15
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    31   0.13 
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    30   0.29 
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    26   3.6  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   3.6  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   3.6  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    26   3.6  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   4.7  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    25   8.3  

>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
 Frame = +3

Query: 321 LKQYPIPALHPNLYDNIMVS---ISAAARTNQIYVVVNGRELMDCTKNDTGEPCPELKEY 491
           + ++  P L+ +L  NI +S        + N I +V +GR+LM C +  +G+    L   
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPI 227

Query: 492 IFNTNVVFDRNGAVIDRVSQD 554
           +   ++ FD+  A +  V QD
Sbjct: 228 L---SLAFDKGPAAVP-VDQD 244


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +3

Query: 279 TNRSTSFVAPLHGILKQYP--IPALHPNLYDNIMVSISAAARTNQIYV 416
           T  +T++++ L G+    P  IP++ P  +DN   ++ + +RT  +Y+
Sbjct: 253 TKENTNYLSQLVGLHPAIPPAIPSMFPMSHDNKKSNMESTSRTRNVYI 300


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 186 DVDQNIRNYVRYIEEAAKQNADIIVFPELTLT 281
           D + N    +  I+EA +QNA + V PEL +T
Sbjct: 18  DFEGNRLRIIDSIKEAKRQNASLRVGPELEVT 49


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 414 VVVNGRELMDCTKNDTG 464
           V++NG E + CTKN TG
Sbjct: 224 VLLNGYECVPCTKNGTG 240


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 414 VVVNGRELMDCTKNDTG 464
           V++NG E + CTKN TG
Sbjct: 224 VLLNGYECVPCTKNGTG 240


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = +3

Query: 294 SFVAPLHGILKQYPIPALHPNLYDNIMVSI 383
           +F+ P   +L+  P+  +HPN+Y  +++ +
Sbjct: 645 NFLKPSEALLQHLPL--IHPNIYGEVVIEV 672


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 294 SFVAPLHGILKQYPIPALHPNLYDNIMVSISAAARTNQIYVVVNGRELMD 443
           S  AP HGI+  +    L  NL    +       R+ Q Y + + RE+ D
Sbjct: 524 SNTAPAHGIISIFTSLILFQNLVPISLYITMDIVRSIQSYFIFSDREMYD 573


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 93  LFVSLTKTSFQKSTPQDSQYVAAAVEYIVSGDVDQNIR 206
           L  +L   S ++  P+ + + A     IVSGD+  N++
Sbjct: 56  LLFTLANASLKQKDPKSNAHEAFIASKIVSGDLKTNLQ 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,803
Number of Sequences: 5004
Number of extensions: 44078
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)