Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21l09
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    29   0.24 
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    29   0.41 
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    26   2.9  
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    25   3.9  
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    25   5.1  
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    25   6.7  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    24   8.9  
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    24   8.9  

>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 29.5 bits (63), Expect = 0.24
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 289 GLGRIFRRMDDDGSKLLNKEEFLYGIKETGLELNKSEAEELF 414
           G+ ++FR  +   S +LN+ EF   +   GL  +  E   LF
Sbjct: 488 GITKVFRHFEKKKSNMLNEVEFYAALASLGLVYDTEEGTALF 529


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 28.7 bits (61), Expect = 0.41
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 304 FRRMDDDGSKLLNKEEFLYGIKETGLELNKSEAEELFSQFDTD 432
           F+  D DG+  +  EE  + +   G  L++ E  ++  + DTD
Sbjct: 91  FKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTD 133


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 361 HKGIL-LCSVVYFHHHPCDGKFFQVPRSLKHLGT 263
           H+G++ +C++VY        KF + P++++ L T
Sbjct: 686 HRGLVCICNIVYSKDQEIFNKFIKTPKAVETLRT 719


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = +1

Query: 187 EELMQKSARAMTQATDPLEKLRLLCLSRGASGILGLGRIFRRMDDDGSKLLNKEEFLYGI 366
           E + ++  +     +  +++   L +   AS  L   R+F  +D+DG   ++ +EF+  +
Sbjct: 24  ERIRKRFIKIDANQSGSIDRNEFLSIPSVASNPLA-SRLFSVVDEDGGGDVDFQEFINSL 82

Query: 367 KETGLELNKSEAEEL-FSQFDTD 432
               +  NK E  +  F  +D D
Sbjct: 83  SVFSVHGNKEEKLKFAFKIYDID 105


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 301 IFRRMDDDGSKLLNKEEFLYGIKETGL-ELNKSEAE 405
           IFRR+ D  S +  ++ FL+     G+ E+  +EAE
Sbjct: 377 IFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAE 412


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +1

Query: 298 RIFRRMDDDGSKLLNKEEFLYGIKETGLELNKSEAEELFSQFDTD 432
           R F   DDD +  ++        KE    ++  E E +  +FD D
Sbjct: 114 RAFELFDDDETGKISLRNLRRVAKELNENIDDQELEAMIEEFDLD 158


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 245 NCACFACPEVLQGSWDLEEFSVAWMMMEVNY 337
           N   F   E  +  +D EEFSV W  + + +
Sbjct: 41  NTTAFWFVEFTESKYDKEEFSVIWNEVSMEF 71


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 287 KIPEAPRDKQSKRSFSRGSVACV 219
           K+   PRDK+ +  F R +  CV
Sbjct: 128 KLENLPRDKREELGFPRATAYCV 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,674,543
Number of Sequences: 5004
Number of extensions: 31426
Number of successful extensions: 106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)