Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21l07
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0506 - 24380469-24380632,24381737-24383893,24384488-243845...    31   0.49 
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157...    28   3.5  
06_01_1192 + 10249316-10249431,10251263-10251279,10251890-102537...    27   6.0  
08_01_0217 + 1738321-1739104,1739683-1739915,1740002-1740292,174...    27   8.0  

>11_06_0506 -
           24380469-24380632,24381737-24383893,24384488-24384541,
           24384543-24384597,24384914-24384916,24385192-24385231,
           24385576-24385632,24388124-24388412,24389764-24389771,
           24390633-24390688,24391207-24391488,24391651-24391811,
           24391887-24392121,24392860-24392943,24393022-24393117,
           24393333-24394055,24396523-24396987
          Length = 1642

 Score = 30.7 bits (66), Expect = 0.49
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +1

Query: 229 HPGYDIQDAKRRSSKLIVED--IPRDPVQGSKNNSTYEAEKLGHDNEPVTRLRDDTTEHS 402
           HP   + DA  R+ ++I +    P+  V  ++ N  +    L  +NE VT L  +   HS
Sbjct: 151 HPDEKVVDASARALRMIYQSKLAPKFDVNNNEKNMEFLLTLLNSENENVTELAANIISHS 210


>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
            28316548-28316615,28316693-28316757,28316922-28320162,
            28320239-28320301,28320756-28320824,28321020-28321055,
            28322035-28322280,28322531-28322569,28322695-28322816,
            28322921-28323004,28323100-28323235,28323486-28323535,
            28323620-28323756,28323863-28323951,28324847-28324954,
            28325080-28325163,28325841-28325888,28326036-28326153,
            28328262-28328347
          Length = 2168

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = -1

Query: 348  QFFGLICTVVLAALNGITGNVLNNQF*RASFSILNIVSRMIIRVPSELPIEDTGCXAHHL 169
            +F  L+C  +L+A +      + +   +A   +    ++M++ V SELP  +     H +
Sbjct: 1842 RFRELVCKHILSATDNSNSEKVPSGTGKAILKVSEDQTQMLLNVISELPNNELLLQKHFM 1901

Query: 168  TQLSSHRRS 142
              LSS  RS
Sbjct: 1902 AVLSSVWRS 1910


>06_01_1192 +
           10249316-10249431,10251263-10251279,10251890-10253797,
           10253880-10254492,10255390-10255392,10257635-10257713,
           10258177-10258236,10258536-10258586,10258800-10258948,
           10260937-10260985
          Length = 1014

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 334 EAEKLGHDNEPVTRLRDDTTEH 399
           E E   H N PV R+R+D ++H
Sbjct: 827 EGEVRTHPNHPVLRMREDRSDH 848


>08_01_0217 +
           1738321-1739104,1739683-1739915,1740002-1740292,
           1740524-1740616,1740912-1741040,1741522-1741695,
           1741883-1741990,1742073-1742279
          Length = 672

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 220 PNYHPGYDIQDAKRRSSKLIVEDIPRDPV 306
           P  HP + +Q     S K     +P+DPV
Sbjct: 366 PMSHPSFSLQQVLEMSEKWRTRPLPKDPV 394


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,975,924
Number of Sequences: 37544
Number of extensions: 185567
Number of successful extensions: 508
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)