Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21l02
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    64   1e-11
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   2.6  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   2.6  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    26   3.4  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    26   4.5  
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc...    25   7.8  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   7.8  

>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 10/126 (7%)
 Frame = +2

Query: 221 DLFNEELFIKPLPPAHLYTYFQF-----TTLVNDNLSSEHTY-LAPRSLVEVLTRFQVDE 382
           + ++E LFIK     + Y  F F     T   + ++ SE ++ L P S+  V+   QV E
Sbjct: 26  ETYDESLFIKSFSSRYSYVSFAFEIGASTDSTHSSVFSESSFSLFPLSIARVMDECQVSE 85

Query: 383 LHFTLTEGQWRHNHW----GYPVLDAAPGAELYAWFSSDVENVDTQWKKLSSTLAGLFCA 550
           LH   T G+W + +W             G E++A+ ++D       W KL++ L+GL CA
Sbjct: 86  LHIRATRGRWDYENWKESPDNGFYSGGLGFEVWAFMANDPSM--KYWLKLTNQLSGLLCA 143

Query: 551 SLNFIE 568
           SLN+I+
Sbjct: 144 SLNYID 149


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 359  LTRFQVDELHFTLTEGQWR 415
            L R  +DE H  LT G WR
Sbjct: 1316 LARVVIDEAHLLLTSGAWR 1334


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 359  LTRFQVDELHFTLTEGQWR 415
            L R  +DE H  LT G WR
Sbjct: 1316 LARVVIDEAHLLLTSGAWR 1334


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 485 DVENVDTQWKKLSSTLAGLF 544
           DVE++D +W ++S TL  LF
Sbjct: 67  DVEDIDNRWAEVSDTLDILF 86


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 467 YAWFSSDVENVDTQWKKLSS 526
           +A+FS D+ NV   W K+++
Sbjct: 261 FAYFSHDISNVPRDWNKVTN 280


>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
           Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 266 HLYTYFQFTTLVNDNLSSEHTYLAPR--SLVEVLTRFQVDEL 385
           +L+ YF  T L+ D +   H  L+P   SL  V T  +V E+
Sbjct: 161 NLFDYFPLTALIEDRIFCLHGGLSPSIDSLDHVRTLDRVQEV 202


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +2

Query: 173 LFFIAVFIETIFNANGDLFNEELFIKPLPPAHLYTYFQFTTLVNDNLSSEHTYLAPR-SL 349
           LF +   + T+ N        +LF+  +PPA + ++  +   +ND L SE T+     S 
Sbjct: 339 LFMVLPHLHTLVNE----LTLKLFVV-IPPAIILSFDSYLDSLNDCLLSESTHTGVLCSS 393

Query: 350 VEVLTRFQVDELHFTL 397
           +++L++F +D  H  +
Sbjct: 394 LKLLSKF-LDVTHMNV 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,270
Number of Sequences: 5004
Number of extensions: 48541
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)