Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21l02
(570 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72507-10|CAA96629.1| 531|Caenorhabditis elegans Hypothetical p... 64 9e-11
Z72507-13|CAH60789.1| 515|Caenorhabditis elegans Hypothetical p... 56 2e-08
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass... 30 1.3
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 30 1.3
AL031627-22|CAI79188.1| 213|Caenorhabditis elegans Hypothetical... 28 4.1
CU457740-3|CAM36333.1| 367|Caenorhabditis elegans Hypothetical ... 28 5.4
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z71178-13|CAF31498.1| 342|Caenorhabditis elegans Hypothetical p... 27 9.5
Z71178-11|CAA94885.2| 309|Caenorhabditis elegans Hypothetical p... 27 9.5
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p... 27 9.5
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr... 27 9.5
Y08637-1|CAA69927.1| 487|Caenorhabditis elegans nicotinic acety... 27 9.5
U23525-2|AAK71378.1| 487|Caenorhabditis elegans Acetylcholine r... 27 9.5
>Z72507-10|CAA96629.1| 531|Caenorhabditis elegans Hypothetical
protein F17C11.7a protein.
Length = 531
Score = 63.7 bits (148), Expect = 9e-11
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 4/117 (3%)
Frame = +2
Query: 227 FNEELFIKPLPPAHLYTYFQFTTLVNDNLSSEH-TYLA-PRSLVEVLTRFQVDELHFTLT 400
F+E+L + P+ L F+F + N +E YL PR + E+L+R+ V +L T+
Sbjct: 23 FDEKLTLSPVSKNELRVDFRFNSEREFNRKTESGDYLTFPRIIQELLSRYSVRKLTVTMA 82
Query: 401 EGQWRHNHWGYPVLDAAP-GAELYAWFSSD-VENVDTQWKKLSSTLAGLFCASLNFI 565
G+W WG P ++P GA+++A F +D E+ D + K L L G+ C S++ I
Sbjct: 83 HGRWNLIGWGLPPQPSSPTGAQVFAEFEADQQEDADERMKFLVEALNGVLCTSISHI 139
>Z72507-13|CAH60789.1| 515|Caenorhabditis elegans Hypothetical
protein F17C11.7b protein.
Length = 515
Score = 56.0 bits (129), Expect = 2e-08
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Frame = +2
Query: 227 FNEELFIKPLPPAHLYTYFQFTTLVNDNLSSEH-TYLA-PRSLVEVLTRFQVDELHFTLT 400
F+E+L + P+ L F+F + N +E YL PR + E+L+R+ V +L T+
Sbjct: 23 FDEKLTLSPVSKNELRVDFRFNSEREFNRKTESGDYLTFPRIIQELLSRYSVRKLTVTMA 82
Query: 401 EGQWRHNHWGYPVLDAAP-GAELYAWFSSD-VENVDTQWKKLSSTLAGL 541
G+W WG P ++P GA+++A F +D E+ D + K L L G+
Sbjct: 83 HGRWNLIGWGLPPQPSSPTGAQVFAEFEADQQEDADERMKFLVEALNGV 131
>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform e protein.
Length = 2702
Score = 29.9 bits (64), Expect = 1.3
Identities = 26/102 (25%), Positives = 44/102 (43%)
Frame = +2
Query: 233 EELFIKPLPPAHLYTYFQFTTLVNDNLSSEHTYLAPRSLVEVLTRFQVDELHFTLTEGQW 412
+ L +K +H+ T LV + S H ++ + ++ + F ++E Q
Sbjct: 136 DTLLLKSSSVSHVATEQMSEHLVMRSKSEHH--ISEKLQERLIEKESFSSQEF-ISENQG 192
Query: 413 RHNHWGYPVLDAAPGAELYAWFSSDVENVDTQWKKLSSTLAG 538
H HW V+D G L W SS+ E K+++ LAG
Sbjct: 193 VHTHWD--VIDNN-GDALICWKSSETEQKSLDAKQVTEELAG 231
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 29.9 bits (64), Expect = 1.3
Identities = 26/102 (25%), Positives = 44/102 (43%)
Frame = +2
Query: 233 EELFIKPLPPAHLYTYFQFTTLVNDNLSSEHTYLAPRSLVEVLTRFQVDELHFTLTEGQW 412
+ L +K +H+ T LV + S H ++ + ++ + F ++E Q
Sbjct: 4982 DTLLLKSSSVSHVATEQMSEHLVMRSKSEHH--ISEKLQERLIEKESFSSQEF-ISENQG 5038
Query: 413 RHNHWGYPVLDAAPGAELYAWFSSDVENVDTQWKKLSSTLAG 538
H HW V+D G L W SS+ E K+++ LAG
Sbjct: 5039 VHTHWD--VIDNN-GDALICWKSSETEQKSLDAKQVTEELAG 5077
>AL031627-22|CAI79188.1| 213|Caenorhabditis elegans Hypothetical
protein Y102A5C.36 protein.
Length = 213
Score = 28.3 bits (60), Expect = 4.1
Identities = 26/93 (27%), Positives = 45/93 (48%)
Frame = +2
Query: 167 NFLFFIAVFIETIFNANGDLFNEELFIKPLPPAHLYTYFQFTTLVNDNLSSEHTYLAPRS 346
NFL+F +ETIF + G LF+ L +++ +F F + LSSE ++++P
Sbjct: 53 NFLYFSPNCVETIFVSLG----RNLFL-CLQRRYIHCFFHFLLKLTLYLSSEISHVSP-- 105
Query: 347 LVEVLTRFQVDELHFTLTEGQWRHNHWGYPVLD 445
+R Q+ +T + W+ YP+ D
Sbjct: 106 -----SRQQIIRKPWTTS---WKPTRINYPIKD 130
>CU457740-3|CAM36333.1| 367|Caenorhabditis elegans Hypothetical
protein C50E10.3 protein.
Length = 367
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 159 TRKTFCFLLPYSLRQFLTLMVIYLMKSYLLNLYHRHTFTHIFNLLP 296
TR+ + L +QF+ L ++YL+ L+ + F N LP
Sbjct: 162 TRRLYLLFLIILFQQFMVLSIVYLLTYNLMKFINVLIFLIAMNFLP 207
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 362 TRFQVDELHFTLTEGQWRHNHWG 430
TRF +D F TEG ++ WG
Sbjct: 424 TRFDIDNSRFLCTEGLFKPKKWG 446
>Z71178-13|CAF31498.1| 342|Caenorhabditis elegans Hypothetical
protein B0024.13b protein.
Length = 342
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 149 CLNLSFNLIIPNTYIYCNLIQRA*LNSYFFA 57
C+ LS L+IP+ Y+Y +I +N F A
Sbjct: 286 CIYLSLFLVIPDAYVYRFIIMFVCINQTFAA 316
>Z71178-11|CAA94885.2| 309|Caenorhabditis elegans Hypothetical
protein B0024.13a protein.
Length = 309
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 149 CLNLSFNLIIPNTYIYCNLIQRA*LNSYFFA 57
C+ LS L+IP+ Y+Y +I +N F A
Sbjct: 253 CIYLSLFLVIPDAYVYRFIIMFVCINQTFAA 283
>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
protein F10F2.1 protein.
Length = 2507
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +2
Query: 224 LFNEELFIKPLPPA--HLYTYFQFTTLVNDNLS 316
LFN +L+I+ P HLY Y L N+N S
Sbjct: 671 LFNPKLWIRARPEVQVHLYQYLATDFLANNNFS 703
>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical
protein F10F2.1 protein.
Length = 2507
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +2
Query: 224 LFNEELFIKPLPPA--HLYTYFQFTTLVNDNLS 316
LFN +L+I+ P HLY Y L N+N S
Sbjct: 671 LFNPKLWIRARPEVQVHLYQYLATDFLANNNFS 703
>Y08637-1|CAA69927.1| 487|Caenorhabditis elegans nicotinic
acetylcholine receptorsubunit ACR-3 protein.
Length = 487
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 159 TRKTFCFLLPYSLRQFLTLMVIYLMKSYLLNLYHRHTFTHI 281
T T + Y L F+ M+ ++ ++N+Y R THI
Sbjct: 283 TSSTIPLMAKYLLMTFIMNMITIMVSVIIINVYFRGPATHI 323
>U23525-2|AAK71378.1| 487|Caenorhabditis elegans Acetylcholine
receptor protein 3 protein.
Length = 487
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 159 TRKTFCFLLPYSLRQFLTLMVIYLMKSYLLNLYHRHTFTHI 281
T T + Y L F+ M+ ++ ++N+Y R THI
Sbjct: 283 TSSTIPLMAKYLLMTFIMNMITIMVSVIIINVYFRGPATHI 323
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,991,731
Number of Sequences: 27780
Number of extensions: 273602
Number of successful extensions: 683
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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