Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21l02
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    25   0.53 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   0.53 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.53 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   8.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   8.6  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 381 SSTWNRVNTSTKDLGAK*VCSDDRLSFTKV 292
           + TW RV  +  DL  K  C++ R +F K+
Sbjct: 237 TETWTRVFNTLVDLVPKHACAEYRRNFKKM 266


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 515 FSIVYQHFPHLRKTKRIVLLQELHQAQDNPN 423
           F+ V   +P +R+T   V  + L++   NPN
Sbjct: 551 FNAVLDQYPLMRRTMESVAAERLNKIGKNPN 581


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 515 FSIVYQHFPHLRKTKRIVLLQELHQAQDNPN 423
           F+ V   +P +R+T   V  + L++   NPN
Sbjct: 519 FNAVLDQYPLMRRTMESVAAERLNKIGKNPN 549


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 402 SVSVKCSSSTWNRVNTSTK 346
           S     SS+TW RVN + K
Sbjct: 427 SAGFSSSSNTWLRVNENYK 445


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 13/43 (30%), Positives = 14/43 (32%)
 Frame = -1

Query: 420 LCLHCPSVSVKCSSSTWNRVNTSTKDLGAK*VCSDDRLSFTKV 292
           L L CP          W R N    D   + V  D  L  T V
Sbjct: 536 LRLKCPVAGYPIEEIKWERANRELPDDLRQKVLPDGTLVITSV 578


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 13/43 (30%), Positives = 14/43 (32%)
 Frame = -1

Query: 420 LCLHCPSVSVKCSSSTWNRVNTSTKDLGAK*VCSDDRLSFTKV 292
           L L CP          W R N    D   + V  D  L  T V
Sbjct: 536 LRLKCPVAGYPIEEIKWERANRELPDDLRQKVLPDGTLVITSV 578


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 402 SVSVKCSSSTWNRVNTSTK 346
           S     SS+TW RVN + K
Sbjct: 427 SAGFSSSSNTWLRVNENYK 445


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,356
Number of Sequences: 438
Number of extensions: 3133
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)