Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21k24
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    27   1.3  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   2.2  
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   2.9  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    26   2.9  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    26   3.9  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    25   5.1  
SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po...    25   6.8  
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    25   6.8  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    25   9.0  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    25   9.0  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    25   9.0  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   9.0  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   9.0  

>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +3

Query: 312 DDIDRSIAGKKKKERIKNLRAVCNKILEFCDRQDADDILYHQVVEDDHSPCSK 470
           D++D  +   KKK   K+ +A  N    F D Q  ++    +  ED   P  K
Sbjct: 64  DEVDEEVVPVKKKPSKKSKKAKANAFEAFADEQSVEE----EEEEDSEKPVRK 112


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 285 PRVIKTLRLDDIDRSIAGKKKKERIKNLRAVCNKILE 395
           P++ +T        S + KK  +++K +R +C++ LE
Sbjct: 343 PKISRTTDTPPASTSNSNKKNLDKLKKMRKLCSRSLE 379


>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 366 LRAVCNKILEFCDRQDADDILYHQVVEDD-HSPCSKEID 479
           L+A C K  ++CD ++   I   +VVE D  S  +KE++
Sbjct: 50  LQAACQKFQDYCDLEEIRIIEAKRVVERDLRSLEAKEVE 88


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 249 NMDLKDNEVTTKPRVIKTLRLDDIDRSIA 335
           N+++ + +  +KP + KT+ L+D  RS+A
Sbjct: 125 NLEIYEIQKNSKPNLTKTISLNDRPRSLA 153


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
 Frame = +3

Query: 141 EGGCLKPLLFIMEGM---TKEESYAERRQLFKDIWITASNMDLKDNEVTTKPRVIKTLRL 311
           E  C +    I+EG+   T+     E + ++ D+  ++    + D+E+  +  V+++   
Sbjct: 320 ESKCFENEQAIIEGVKDFTEFPDLEETQIIYSDLIASSEVSPIYDSELKYES-VLESKSS 378

Query: 312 DDIDRSIAGKKKKERIKNLRAVCNKILEFCDRQ 410
            +   +I  KK  ER+ +L   C K L F D++
Sbjct: 379 RNEQATIKEKKDNERVLDLSQQCTKFL-FSDQK 410


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +3

Query: 177 EGMTKEESYAERRQLFKDIWITASNMDLKDNEVTTK 284
           + + ++   +E+ +LF+  WIT  N+D+K  + ++K
Sbjct: 217 DDVEEDRVLSEKMELFQ--WITEENLDIKKQKSSSK 250


>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 171

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 181 G*LKRKVTLSDDSYSKIYGSQHPIW 255
           G ++  + LSD+ +SK YG   P++
Sbjct: 101 GKIEEAMKLSDEEFSKTYGFSKPVF 125


>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 374 CSQVFNAFLFLFTSNRSIYIVKAEGFDDSWFG 279
           CS+   AFL      R   ++ AEGF ++  G
Sbjct: 210 CSKTVEAFLRFAAKKRKFSVIVAEGFPNNQKG 241


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
 Frame = +3

Query: 264 DNEVTTKPRVIKTLRLDDIDRSIAGKKKKERIK--------NLRAVCNKILEFCDRQDAD 419
           +N +   P V + +R+DD   SI   +KK   K        NL A  N + E+ D    D
Sbjct: 442 ENRIPALPEVKQIIRVDDPSPSIRQGRKKRHAKRSGVEIKSNLEAKSNDVEEY-DAFYKD 500

Query: 420 DILYHQVVEDDHSPCSKE 473
           +I    +  ++ +P + E
Sbjct: 501 EINCEVLSWNEQNPKASE 518


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +3

Query: 165 LFIMEGMTKEESYAERR---QLFKDIWITASNMDLKDNEVTTKPRVIKTLRLDD 317
           LF  E  T + + A  R   Q+  D      + DLKD +   KP V K+  +DD
Sbjct: 231 LFTFEETTFDRAAAIDRKQIQISNDQLTVKEDFDLKDMQSDIKPDVEKSDAMDD 284


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 459 VSDRLQPPDDKVCRQRLVD 403
           V D++ P D +VC ++LVD
Sbjct: 51  VQDQIAPYDRRVCMEQLVD 69


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 383 IANCSQVFNAFLFLFTSNRSIYIVKA 306
           + NCS +F A    F   +  Y+VKA
Sbjct: 225 VTNCSLLFEAIKTTFGLEKDSYVVKA 250


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 275 HDQTKSHQNPPP 310
           HD T +HQ PPP
Sbjct: 167 HDDTNNHQIPPP 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,933,088
Number of Sequences: 5004
Number of extensions: 37269
Number of successful extensions: 119
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)