Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21k24
         (519 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0438 + 3852221-3853207,3853544-3854757,3855258-3855330,385...    32   0.24 
02_05_0602 + 30283893-30284170,30286259-30286305,30286534-302875...    29   1.7  
08_01_0273 - 2203828-2204124,2204812-2205072,2205161-2205296,220...    29   3.0  
07_03_0515 + 18992296-18993720                                         28   5.2  
02_02_0469 + 10691648-10691692,10691755-10691907,10692043-106920...    27   6.8  
09_06_0315 - 22246879-22247643,22247722-22247862,22248509-222485...    27   9.0  

>08_01_0438 +
           3852221-3853207,3853544-3854757,3855258-3855330,
           3856715-3856843,3857060-3857103,3857186-3857265,
           3857342-3857396,3857712-3857919
          Length = 929

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +3

Query: 330 IAGKKKKERIKNLRAVCNKILEFCDRQDADDILYHQVVEDDH 455
           +AGKK ++R  ++R  CN +LE   R D+  I+   V E +H
Sbjct: 148 VAGKKTRKRPASIREGCNAMLEVLRRGDSKWIVTKLVKEHNH 189


>02_05_0602 +
           30283893-30284170,30286259-30286305,30286534-30287510,
           30287611-30287920,30288561-30290197
          Length = 1082

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +3

Query: 291 VIKTLRLDDIDRSIAGKKKKERIKNLRAVCNKILEFCDRQDADDILYHQVVE 446
           ++ T+R++D D  IA +K  E +KNL   C+K +++       + L   +VE
Sbjct: 487 ILTTMRINDSDDPIAAQKAGEVLKNLEK-CSKNIKYMAESGYLEPLQSHLVE 537


>08_01_0273 -
           2203828-2204124,2204812-2205072,2205161-2205296,
           2205438-2205656,2206130-2206323,2206339-2206505,
           2206862-2207132,2207740-2207784
          Length = 529

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +3

Query: 180 GMTKEESYAERRQLFKDIWI 239
           G+TKEE+YA+ R+L ++ W+
Sbjct: 453 GITKEEAYAKLRELVEESWM 472


>07_03_0515 + 18992296-18993720
          Length = 474

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = +3

Query: 243 ASNMDLKDNEVTTKPRVIKTLRLDDIDRSIAGKKKKERIKNLRAVCNKILEFCDRQDADD 422
           A  +D K N       V + +R   +  S  G+K +E+   ++AVC K +E      + D
Sbjct: 404 AMKVDRKRNNFVEASEVERAVR-SLMGGSEEGRKAREKAAEMKAVCRKAVE---EGGSSD 459

Query: 423 ILYHQVVED 449
           +  H++ E+
Sbjct: 460 MAVHKLYEE 468


>02_02_0469 +
           10691648-10691692,10691755-10691907,10692043-10692093,
           10692162-10692224,10692327-10693031,10693128-10693223,
           10693307-10695547
          Length = 1117

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 233 MDHSIQYGFKRQRSHDQTKSHQNP 304
           +DHS+Q+  +  RSHD  +S + P
Sbjct: 397 IDHSLQHTEEHNRSHDNVESSEAP 420


>09_06_0315 -
           22246879-22247643,22247722-22247862,22248509-22248561,
           22248755-22248919,22249685-22249799,22249937-22250025,
           22250578-22250608
          Length = 452

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 315 DIDRSIAGKKKKERIKNLRAVCNKILEFCDRQDA 416
           D+  S   + ++E +KN+    N +LE  D+QDA
Sbjct: 280 DLMESAFLRLEQELVKNVARTANHVLEMQDKQDA 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,097,545
Number of Sequences: 37544
Number of extensions: 217742
Number of successful extensions: 471
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)