Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21k24
         (519 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    25   0.35 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   0.82 
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    23   1.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   4.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.6  

>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 25.4 bits (53), Expect = 0.35
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 312 DDIDRSIAGKKKKERIKNLRAVCNK 386
           D + + +  ++ K+ IKNLR VC+K
Sbjct: 21  DTMSKKMTIEEAKKTIKNLRKVCSK 45


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -2

Query: 374 CSQVFNAFLFLFTSNRSIYIVKAEGFDDSWFGRDFVV 264
           C     A  FL  S  S Y+V   G+  S   RDF V
Sbjct: 3   CMLEIAARSFLLLSIASTYVVSVAGYKHSRRHRDFTV 39


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 348 KERIKNLRAVCNK 386
           K+ IKNLR VC+K
Sbjct: 7   KKTIKNLRKVCSK 19


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 312 DDIDRSIAGKKKKERIKNLRAVCN 383
           DD++  I G   KE I+N   V N
Sbjct: 394 DDVNFRILGANVKELIRNTHCVNN 417


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 252 MDLKDNEVTTKPRVIKTLRL 311
           +DL  NE+T+ P  ++ L L
Sbjct: 436 LDLSGNELTSVPDALRDLAL 455


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,463
Number of Sequences: 438
Number of extensions: 2467
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)