Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21k22
         (468 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   5.0  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   5.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.6  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   8.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.7  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   8.7  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   8.7  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 383 LPAPRLRCSDP*PSCCQHPIAQRQSCPDG 297
           LPAPR+    P  SC         +CPDG
Sbjct: 48  LPAPRINSKSPLLSC---------ACPDG 67


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 383 LPAPRLRCSDP*PSCCQHPIAQRQSCPDG 297
           LPAPR+    P  SC         +CPDG
Sbjct: 48  LPAPRINSKSPLLSC---------ACPDG 67


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 269 QSPLSRAPGPQG*P 228
           Q P S APGPQ  P
Sbjct: 14  QQPSSGAPGPQPSP 27


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 13  LLEKCFYSI*NEGNCTHTGRSMRQ 84
           LL   F  + +EG CT  G  +++
Sbjct: 43  LLNNYFKCLMDEGRCTAEGNELKR 66


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 158 DSDLQLERINVYYNEATGGKYV 223
           D+ L+   I  Y N+  GG++V
Sbjct: 72  DARLKFSNIAPYLNQIYGGQFV 93


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 13  LLEKCFYSI*NEGNCTHTGRSMRQ 84
           LL   F  + +EG CT  G  +++
Sbjct: 43  LLNNYFKCLMDEGRCTAEGNELKR 66


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 13  LLEKCFYSI*NEGNCTHTGRSMRQ 84
           LL   F  + +EG CT  G  +++
Sbjct: 43  LLNNYFKCLMDEGRCTAEGNELKR 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,699
Number of Sequences: 438
Number of extensions: 3067
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)