Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21k16
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual    43   3e-05
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    31   0.15 
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    27   1.9  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    26   4.4  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   5.8  

>SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
 Frame = +1

Query: 208 MKLITHNMLT---SKCLKGVVTGYPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVA 378
           MKL+T N L     KC       +PL +    + +++++  PEF+  ++P++DW  L   
Sbjct: 1   MKLLTANFLNCSNKKCTSSP-EAFPLDVVDAKLAIQQLELKPEFLIGIMPRIDWNALLKT 59

Query: 379 ADSIGHSDGLPRSLENKYDENEEFL 453
              +G+   LP    +  D+++E L
Sbjct: 60  TRQLGNY-SLPDEKPDLVDDSDEVL 83



 Score = 29.1 bits (62), Expect = 0.47
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 497 GHLTCPESGRQFPISKGIPNML 562
           G + C   G  +PI +GIPNML
Sbjct: 99  GKMVCGNCGHVYPIFEGIPNML 120


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 316 FNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRSL 420
           F  +FI  V+ +++WE+L +     G  +GL R+L
Sbjct: 100 FQEQFIENVVKEINWEILAILISLSGIENGLVRNL 134


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
            polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 512  DKSSVPLQLPPLTRLYELSFKNSSFSSYLFS 420
            +KS +PL+ PPL     L  K    S Y FS
Sbjct: 1090 NKSYIPLEFPPLPARGALDLKKVLESKYFFS 1120


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 316 FNPEFISRVIPKLDWEVLWVAADSIGHSDGLP 411
           F+PE  +  +  LDW   W  A S G    LP
Sbjct: 577 FSPEVRNGFLKTLDWLSQWACARSYGLGTRLP 608


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -2

Query: 485 PPLTRLYELSFKNSSFSSYLFSKDLGRPSLWPMLSAATHNTSQSSFGITRLINSG 321
           PP TR    S     FSS  F   + R SL    S     +S+S+      IN+G
Sbjct: 698 PPFTRPASPSSSKFRFSSSSFQSTIRRNSLTSPYSVPELRSSESNQNKAGSINTG 752


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,300,376
Number of Sequences: 5004
Number of extensions: 45385
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)