Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21k16
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1314 - 25721137-25721538                                         67   1e-11
09_04_0683 - 19431034-19431495,19431632-19431997,19432055-194323...    29   3.4  
09_04_0564 + 18565583-18566449,18569662-18570123                       28   5.9  
11_01_0185 + 1455635-1455817,1455997-1456051,1456415-1456611,145...    27   7.8  
06_03_0138 + 17093196-17093325,17095704-17095804,17096224-170962...    27   7.8  

>07_03_1314 - 25721137-25721538
          Length = 133

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 30/70 (42%), Positives = 43/70 (61%)
 Frame = +1

Query: 208 MKLITHNMLTSKCLKGVVTGYPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADS 387
           M+L+THNML S   +G VTGYPL +       KE + NPEF+  ++PK+DW  L  A  +
Sbjct: 1   MRLLTHNMLASNA-RGAVTGYPLKLQVVKWSTKEAEPNPEFLRGMLPKIDWPALVAATQA 59

Query: 388 IGHSDGLPRS 417
           +G  + LP +
Sbjct: 60  LGLPELLPEA 69



 Score = 39.9 bits (89), Expect = 0.001
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +2

Query: 455 RKAHKXXXXXXXXXGHLTCPESGRQFPISKGIPNML 562
           R+ H+         G L CP++ R FPIS+G+PNML
Sbjct: 90  RRLHRALLEIHIEEGALVCPDTDRCFPISRGVPNML 125


>09_04_0683 -
           19431034-19431495,19431632-19431997,19432055-19432326,
           19433621-19433686,19433924-19433978,19434509-19434577,
           19435200-19435307,19435394-19435462,19435883-19436038,
           19436089-19436229,19436514-19436568,19437103-19437233,
           19437382-19437486
          Length = 684

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 358 WEVLWVAADSIGHSDGLP 411
           W++ WVA  +IGHS+ LP
Sbjct: 576 WQLWWVALRAIGHSECLP 593


>09_04_0564 + 18565583-18566449,18569662-18570123
          Length = 442

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 427 YFLKILADHHCGRCYQRPPIILPNPA 350
           Y+   L +HH   C+  PP   P+PA
Sbjct: 5   YYASFLKNHHRRYCFSTPPSPSPSPA 30


>11_01_0185 +
           1455635-1455817,1455997-1456051,1456415-1456611,
           1456850-1457206,1457355-1457424,1457527-1457672,
           1457786-1457831,1457910-1457962,1458507-1458651,
           1459268-1459386,1459494-1459565,1459872-1459975,
           1460117-1460173,1460260-1460452,1460535-1460678,
           1460825-1460927,1461444-1461592,1462674-1462728,
           1464037-1464227,1464580-1464701,1464831-1464978,
           1465354-1465423,1465499-1465644,1466097-1466247,
           1466614-1466732,1466807-1466848,1466849-1466961,
           1467496-1467552,1467642-1467834,1468040-1468183,
           1468567-1468665
          Length = 1280

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 383 SAATHNTSQSSFGITRLINSGLKSTSLTLMSVALIAR 273
           SA T   S++SF   ++IN G    SLT+ +  L AR
Sbjct: 584 SAITWQDSENSFLRVKIINFGSDPVSLTISATGLQAR 620


>06_03_0138 +
           17093196-17093325,17095704-17095804,17096224-17096292,
           17096403-17097650,17097763-17097871,17099459-17099655,
           17099732-17099842,17099927-17100079
          Length = 705

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 22/52 (42%), Positives = 29/52 (55%)
 Frame = -2

Query: 446 SSFSSYLFSKDLGRPSLWPMLSAATHNTSQSSFGITRLINSGLKSTSLTLMS 291
           SS S+ +FS  L  PS+ P +S      SQS  GI+ L+N+  K  SL L S
Sbjct: 314 SSVSASVFSLGLTPPSVNPPVSTIESTMSQSQ-GISPLMNN--KPVSLPLDS 362


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,509,302
Number of Sequences: 37544
Number of extensions: 251082
Number of successful extensions: 600
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)