Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21k10
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    31   0.16 
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac...    28   1.5  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    27   2.0  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    27   3.4  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   3.4  
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo...    26   4.5  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   6.0  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    25   7.9  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    25   7.9  

>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -2

Query: 397 YTKISFSQIITDHLYTPALKIFDSLYTILSRFIKLKRELSLIQKNNATITTI 242
           +TKISF+ II D L     K+   +  I S+  +L  E+SL++K    I  I
Sbjct: 28  FTKISFNNIILDALSGHQRKLEIKIINIESKCNELSSEISLLRKRLGIIEEI 79


>SPBC16E9.09c |||COPII vesicle coat component
           Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 126 VARRFASNHKLHKNERRSNIYT*IHTNNE 40
           V   FA+NH ++KN+ RSN      T NE
Sbjct: 70  VDETFANNHLIYKNDLRSNEAVRFTTTNE 98


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 239 VDCPELPAASLRRSEDSRSPSPANSKSTTN*PTRRSGPSPAALHRIIN 96
           +D   +   S ++S  S+SP+   SK ++N  +RRS  S   L  + N
Sbjct: 85  LDLENMFEESSKQSPPSKSPTKNPSKKSSNNSSRRSSSSVGKLSNVSN 132


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/75 (22%), Positives = 31/75 (41%)
 Frame = -1

Query: 254 DHDYSVDCPELPAASLRRSEDSRSPSPANSKSTTN*PTRRSGPSPAALHRIINYTRMRDV 75
           D D SV   +L   S +R+  S       +K +   P  +        HR ++Y+R+ ++
Sbjct: 451 DSDSSVPLSQLQKKSQQRNSVSHEIQNRGTKGSPKEPKAKPSTERPETHRTLSYSRLSEL 510

Query: 74  QIFIHRFIRTTNNTR 30
                  IR  + T+
Sbjct: 511 SKTFSPEIREPSLTK 525


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -2

Query: 430 GPLLNNLIT*KYTKISFSQIITDHLYTPALKIFDSLYTILSRFIKLKRELS 278
           G LL  L +  +   ++S +I D  +  ++   D L  +LSR ++L+RE+S
Sbjct: 501 GILLRELSS-DFLLTAYSAVIVDEAHERSVNT-DILLGLLSRIVRLRREMS 549


>SPBC16A3.06 |||tRNA specific adenosine deaminase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 510 KFCTDRCSSEVYLAVCTSNT*LLLIPL 590
           K CTD+ +++ YL++  S T L+  P+
Sbjct: 199 KSCTDKLAAKQYLSILNSQTSLICEPI 225


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -1

Query: 248 DYSVDCPELPAASLRRSEDSRSPSPANSKSTTN*PTRRSGPSPAALHRIINYTR 87
           DY    P  P +S+  S  SRSP  +  +  ++  +R   PS  + HR  +Y+R
Sbjct: 125 DYGSRSPS-PHSSVD-SHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHRYDDYSR 176


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 319 TILSRFIKLKR-ELSLIQKNNATITTIVSIVQNCLRHLYVA 200
           T    F KL++  L  IQ N  T    ++ + +CLR LYV+
Sbjct: 183 TKFENFEKLQKLSLLSIQSNRITQFENLACLSHCLRELYVS 223


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 283 LSLIQKNNATITTIVSIVQNCLRHLY 206
           +SL   NN  +TT++S+ +N   H++
Sbjct: 12  ISLSIDNNYLVTTLISLKENVFLHIF 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,011
Number of Sequences: 5004
Number of extensions: 46211
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)