Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21k10
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97401-2|AAB52467.3|  193|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U41268-3|AAA82436.1|  270|Caenorhabditis elegans Forkhead transc...    29   3.2  
U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z66512-4|CAA91326.1|  329|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>U97401-2|AAB52467.3|  193|Caenorhabditis elegans Hypothetical
           protein F21A9.1 protein.
          Length = 193

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1

Query: 572 LRVRRAHGKVDLGTTSISTELYNHHYNLSTHYNISIVHST 453
           LRVR   G V   TTS     Y  +Y     YN+S++ ST
Sbjct: 37  LRVRNPEGLVAF-TTSFRNNEYLKNYKFDKVYNVSLIDST 75


>U41268-3|AAA82436.1|  270|Caenorhabditis elegans Forkhead
           transcription factor familyprotein 2, isoform a protein.
          Length = 270

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/59 (35%), Positives = 33/59 (55%)
 Frame = -1

Query: 275 DTKK*RYDHDYSVDCPELPAASLRRSEDSRSPSPANSKSTTN*PTRRSGPSPAALHRII 99
           DT    Y HD S+D  E   ++L  S+DS+SPS +NS+  T  P+  +   P + + +I
Sbjct: 49  DTMSTDYLHDESID-DERSESTL--SKDSKSPSSSNSEEKT--PSSPNDKPPFSYNALI 102


>U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical
           protein F59A6.3 protein.
          Length = 786

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 230 PELPAASLRRSEDSRSPSPANSKSTTN*PTRRSGPS 123
           P   + S   +   +S S   +KSTT+ PT  SGPS
Sbjct: 475 PSTSSGSTVSTTSGQSTSSGTTKSTTSGPTTSSGPS 510


>Z66512-4|CAA91326.1|  329|Caenorhabditis elegans Hypothetical
           protein F52H3.6 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = -1

Query: 596 ITQGNEEQLRVRRAHGKVDLGTTSISTELYNHHYNLSTHYNISIVHSTELIPLFAG 429
           I +GN E   + R +G  D      S  LYN   NL  H  +  + S  +  +  G
Sbjct: 116 ILRGNHECASINRTYGFYDECKRRYSLALYNDFQNLFNHLPLCAMISGRIFCMHGG 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,765,763
Number of Sequences: 27780
Number of extensions: 261299
Number of successful extensions: 768
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)