Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21k04
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   194   6e-51
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   194   8e-51
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    26   4.7  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    26   4.7  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    26   4.7  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   8.1  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  194 bits (474), Expect = 6e-51
 Identities = 86/110 (78%), Positives = 99/110 (90%)
 Frame = +2

Query: 254 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDR 433
           H KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DR
Sbjct: 3   HCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDR 62

Query: 434 PGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSE 583
           PGSK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE
Sbjct: 63  PGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSE 112


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  194 bits (473), Expect = 8e-51
 Identities = 85/110 (77%), Positives = 99/110 (90%)
 Frame = +2

Query: 254 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDR 433
           H KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DR
Sbjct: 3   HCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDR 62

Query: 434 PGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSE 583
           PGSK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE
Sbjct: 63  PGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSE 112


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 211 HDFSSVANSYTSFPPYSTLKST 146
           HD S  A+ Y  FPPY   K T
Sbjct: 261 HDNSIWASRYAHFPPYDKKKDT 282


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -3

Query: 424 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESHRPMTGC*KF 260
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH   T    F
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTF 398


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 250 HAGRQSQLKWTTQHDFSSVANSYTSFPPYS 161
           HA R + L  +T+H   S A  +T F P S
Sbjct: 309 HAARVNHLSLSTEHVLRSGAYDHTDFKPKS 338


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 202 SSVANSYTSFPPYSTLKSTRTPLKVLHSNSLNFT 101
           SS + S +S  P S + ST TP+ V  S+  +FT
Sbjct: 235 SSASLSSSSVLPTSIITSTSTPVTVSSSSLSSFT 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,338
Number of Sequences: 5004
Number of extensions: 47930
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)