Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21k03
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...   118   5e-28
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...   116   1e-27
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    27   1.6  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   4.9  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    25   4.9  
SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual    25   6.5  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.6  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score =  118 bits (283), Expect = 5e-28
 Identities = 51/83 (61%), Positives = 59/83 (71%)
 Frame = +3

Query: 99  TKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXX 278
           TKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KA        
Sbjct: 2   TKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGT 61

Query: 279 XXMRHLKIVRRRFRNGFKEGKPT 347
             M +LK V R F+NGF+ GKPT
Sbjct: 62  GRMSYLKKVHRSFKNGFRAGKPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score =  116 bits (280), Expect = 1e-27
 Identities = 52/90 (57%), Positives = 60/90 (66%)
 Frame = +3

Query: 99  TKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXX 278
           TKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KA        
Sbjct: 2   TKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGT 61

Query: 279 XXMRHLKIVRRRFRNGFKEGKPTPPKKAVA 368
             M +LK V R F+NGF+ GKP     A A
Sbjct: 62  GRMSYLKKVHRSFKNGFRSGKPAAAVAASA 91


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 304 TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYPHWAHF 191
           T+F   +  +PV+ +   FT+ W   N A  +P  A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +3

Query: 132 NKTHTLCRRCGRSSYHIQKSKCAQCGYP 215
           N  H  C  C    Y  + S C QC  P
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 93  NYTKGTSSFGKRRNKTHTLCRRCGRSS 173
           N  KGTS     R+ T+ L R C +SS
Sbjct: 211 NKKKGTSGGQATRHLTYALSRTCSQSS 237


>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 94  IIRRVPQASVSAEIRPIRYAEDVVDRHITFKNQ 192
           IIRR+P   +  E+R  R +E   +  I   NQ
Sbjct: 80  IIRRIPLLPIIQELRETRMSEVSAEEKILLWNQ 112


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query: 404 IFIYLAHIDS*RSYSLLGRRWFPFFKT---ITEAP 309
           IFIYL+  +    Y +L  R F  +KT   IT+ P
Sbjct: 17  IFIYLSVANKIMFYCILNERAFKHYKTYRRITDCP 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,624,774
Number of Sequences: 5004
Number of extensions: 30708
Number of successful extensions: 69
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)