Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21j23
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    28   1.1  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    26   3.2  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    26   3.2  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    26   4.2  
SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c...    26   4.2  
SPBC887.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.6  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   9.8  
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    25   9.8  

>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +1

Query: 91  SYYTATKDVLNKQKLSFSYHFLAISKMSTKYHKNCTKDPNELEDPTRKQPDEQLTRKLKP 270
           S Y +     N ++ +  YH+   S  ST+           +E P    PD  L+ KL+ 
Sbjct: 50  SSYDSPSSSTNSKEHNSPYHYRVPSNNSTRASFGAASTDTNVELPKINLPDSSLSSKLQ- 108

Query: 271 LTTKPLCDCSN 303
            + K  C+ S+
Sbjct: 109 -SCKSACENSS 118


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +1

Query: 226 TRKQPDEQLTRKLKPLTTKPLCDCSNCTCKDCPDVLKTFSINVTEDSCDFGTKK 387
           ++  PD  L R+   +T   LC+  +  C  C   ++  ++    D C FG+ +
Sbjct: 2   SKHHPDLVLCRRQPGITVGKLCERCDEKCPICDSHVRPTTLVRICDECAFGSSQ 55


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
 Frame = +1

Query: 61  QQQCIYIAK-HSYYTATKDVLNKQKLSFSYHFLAISKMSTKYHKN------CTKDPNELE 219
           Q Q I I+K  +  T T+DV+NK     +   L   K S K+  N      CT + +E+ 
Sbjct: 241 QMQKIKISKLGTAETQTEDVMNKSSQKENNDILRKHKTSVKFPTNLDALNSCTMENHEIN 300

Query: 220 D--PTRKQPDEQLTR 258
           +   T K  D  +T+
Sbjct: 301 ELTATNKMNDGPITK 315


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 461 LFNTSSKLWQSFMDTSCELSSICSTFFVPKSQESSVTLI 345
           ++ T  +L     D   E SSI S F +PK  E  V  +
Sbjct: 233 MYETCMRLRGKTYDYKVEYSSINSLFLLPKPDEQHVVFV 271


>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 50

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 253 TRKLKPLTTKPLCDC-SNCTCKDCPD 327
           T + K    KP CDC S C C+DC +
Sbjct: 4   TTQCKSKQGKP-CDCQSKCGCQDCKE 28


>SPBC887.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +1

Query: 64  QQCIYIAKHSYYTATKDVLNKQKLSFSYHFLAISKMSTKYHKNCTKDPNELEDPTRK 234
           +Q  + A+  YY     +   +K +F    +     S +YH+  + + NE+ED  R+
Sbjct: 59  EQSKFAAEEQYYLGNYSLA--KKFAFQALDVPTDSSSIEYHRLSSGEINEIEDIIRR 113


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +1

Query: 328 VLKTFSINVTEDSCDFGTKKVEQIDESSHEVSIKDCQSLLDVLNNTRNCTCEIIA 492
           +L T +IN  ED    GT+   +I   +HE     C  +  +L+  RN    + A
Sbjct: 417 ILNTNAINEDEDLKGHGTQVYPKISAENHEHLF--CLRINPMLDGLRNSVATVDA 469


>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = +1

Query: 301 NCTCKDCPDVLKTFSINVTEDSCDFGTKKVEQIDESSHEVSIKDCQSLLD-VLNNTRNCT 477
           NC        +  F I +   S    T KV+ +      V I    +++     NT NC 
Sbjct: 4   NCDISTVVVQIDEFGIYIGNASDKEPTWKVDLVPYKQSWVPISIVTTIIQRYCLNTFNCL 63

Query: 478 CEIIAKVVRSNVYIHRGKHK 537
            EI+  V+  ++++ R + K
Sbjct: 64  AEIVRVVLVLDIFVTRKQKK 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,129,484
Number of Sequences: 5004
Number of extensions: 41056
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)