Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21j15
         (612 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY224601-1|AAP50265.1|  158|Homo sapiens intraflagellar transpor...    89   2e-17
BC038094-1|AAH38094.1|  132|Homo sapiens IFT20 protein protein.        88   2e-17
BC002640-1|AAH02640.1|  148|Homo sapiens intraflagellar transpor...    44   4e-04

>AY224601-1|AAP50265.1|  158|Homo sapiens intraflagellar transport
           protein 20-like protein protein.
          Length = 158

 Score = 88.6 bits (210), Expect = 2e-17
 Identities = 47/123 (38%), Positives = 75/123 (60%), Gaps = 1/123 (0%)
 Frame = +2

Query: 245 SVMAEE-LQKVHLFYDDINKIKVLEENVLKDTEDLRDTCKEYENKVQNFEXXXXXXXXXX 421
           + MA++ L +  L +D++NK++VL+  V + T +L++ CK++ +K+  F+          
Sbjct: 25  TAMAKDILGEAGLHFDELNKLRVLDPEVTQQTIELKEECKDFVDKIGQFQKIVGGLIELV 84

Query: 422 XXXGDNVENKKMAAIGAMNLLKSIAKDKESEQLKLQAEINDKTSLLEQIDSEYDTLQILE 601
                  EN+KM AIGA NLLKSIAK +E++Q +LQA I +K   LE+   EY+ L  +E
Sbjct: 85  DQLAKEAENEKMKAIGARNLLKSIAKQREAQQQQLQALIAEKKMQLERYRVEYEALCKVE 144

Query: 602 ATQ 610
           A Q
Sbjct: 145 AEQ 147


>BC038094-1|AAH38094.1|  132|Homo sapiens IFT20 protein protein.
          Length = 132

 Score = 88.2 bits (209), Expect = 2e-17
 Identities = 47/121 (38%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
 Frame = +2

Query: 251 MAEE-LQKVHLFYDDINKIKVLEENVLKDTEDLRDTCKEYENKVQNFEXXXXXXXXXXXX 427
           MA++ L +  L +D++NK++VL+  V + T +L++ CK++ +K+  F+            
Sbjct: 1   MAKDILGEAGLHFDELNKLRVLDPEVTQQTIELKEECKDFVDKIGQFQKIVGGLIELVDQ 60

Query: 428 XGDNVENKKMAAIGAMNLLKSIAKDKESEQLKLQAEINDKTSLLEQIDSEYDTLQILEAT 607
                EN+KM AIGA NLLKSIAK +E++Q +LQA I +K   LE+   EY+ L  +EA 
Sbjct: 61  LAKEAENEKMKAIGARNLLKSIAKQREAQQQQLQALIAEKKMQLERYRVEYEALCKVEAE 120

Query: 608 Q 610
           Q
Sbjct: 121 Q 121


>BC002640-1|AAH02640.1|  148|Homo sapiens intraflagellar transport
           20 homolog (Chlamydomonas) protein.
          Length = 148

 Score = 44.0 bits (99), Expect = 4e-04
 Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
 Frame = +2

Query: 251 MAEE-LQKVHLFYDDINKIKVLEENVLKDTEDLRDTCKEYENKVQNFEXXXXXXXXXXXX 427
           MA++ L +  L +D++NK++VL+  V + T +L++ CK++ +K+  F+            
Sbjct: 1   MAKDILGEAGLHFDELNKLRVLDPEVTQQTIELKEECKDFVDKIGQFQKIVGGLIELVDQ 60

Query: 428 XGDNVENKKMAAI 466
                EN+KM ++
Sbjct: 61  LAKEAENEKMKSL 73


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,129,480
Number of Sequences: 237096
Number of extensions: 901294
Number of successful extensions: 2292
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2287
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6522878360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)