Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21j08
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   0.84 
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   1.5  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   3.4  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    25   5.9  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   5.9  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   7.8  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    25   7.8  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 400 SPFTSTTQRNRAQHVGNSTFSSSMYSWHSSAFSGIFGFRHPTAAMKYFPSLISH 239
           S F+STT  +++    +ST SSS  +  S+  S       P ++  +  SL SH
Sbjct: 353 SSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSH 406


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 195 PWQEWSDHYTCHRYRCEIRDG 257
           P+Q+W D+Y C  Y   +R G
Sbjct: 478 PYQKWVDNYFCEDYLSAVRRG 498


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 445 SGNSSPGCPLVCTILSPFTSTTQRNRAQHVGNSTFSSSMYSWHSSAFS 302
           S +SSP      T  SP +S++  + +    +S+ SSS  S  SS+ S
Sbjct: 139 SSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 186


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = -2

Query: 365 TARGEFDILIFDVFVAFQCVFRYFWFSTSDSSYEVFPVS 249
           T +GE      D+ +  + V++ +W  +  ++  +FPV+
Sbjct: 229 TEQGELSFKKGDIILVLESVYKDWWKGSCKNAVGIFPVN 267


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 279  GCRKPKIPENALECHEYIEDEN 344
            G  K  IP+N  EC E + DE+
Sbjct: 1567 GRSKVTIPQNMFECKELVADEH 1588


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 432 ELFPDKPWKGQQNEPNPAVVGMSG 503
           + F    WK Q NE NP  +GM G
Sbjct: 337 DFFTSDEWKNQVNESNP--LGMGG 358


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 8   LRNSLKKQGVLTFSYYGWRPENT 76
           +R+  ++ GVL   +YGW+PEN+
Sbjct: 570 VRSKGQEDGVL---FYGWKPENS 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,268
Number of Sequences: 5004
Number of extensions: 55782
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)