Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21j07
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 38 0.002
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 28 1.4
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit... 28 1.4
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 27 1.8
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 27 3.1
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe... 27 3.1
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar... 26 4.2
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 26 4.2
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 25 7.3
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 37.5 bits (83), Expect = 0.002
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Frame = +3
Query: 402 WSCYGLGELKLLSYKPEGTHLCRKIHHMYHCKEDDWGFAHFIAWDDLMNPDN----GFVK 569
+SC L L + + HH + + DWGF F+ + P F++
Sbjct: 135 YSCCAQFALSLSNVQDPTVMQINTSHHRFRSEVKDWGFTRFVDLRKIAVPTPEFPVPFLE 194
Query: 570 NDSITLEAHV-IAEAPHGVSW------DSKKHPGYV 656
ND I + V + + P GV W +SKK GYV
Sbjct: 195 NDEICISVTVRVLQDPTGVLWHSFVNYNSKKETGYV 230
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +3
Query: 447 PEGTHLCR-KIHHMYHCKED--DWGFAHFIAWDDLMNPDN 557
P+G HL ++H Y E DW + HF++ L++ DN
Sbjct: 557 PDGDHLTLLNVYHAYKSGEGTADWCWNHFLSHRALISADN 596
>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 161
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 114 AEMIEASSVDNATAPLPINHDFTPQDEDMARSE 212
A MI S ++ I +DFTP++E+ R E
Sbjct: 122 ANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKE 154
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 531 WDDLMNPDNGFVKNDSITLE 590
W D+++PD FVK S+ E
Sbjct: 93 WSDILDPDADFVKQSSLAFE 112
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 209 GGHFPFYSSKCQRVERASAIP 271
GG FP+ S+CQ + S IP
Sbjct: 127 GGKFPYVFSECQAIHARSFIP 147
>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = -1
Query: 205 RAISSSCGVKS*LMGRGAVALSTLLASIISAANLISYFNLL 83
+ I S V L G + L+T S+I+A LISYFNLL
Sbjct: 192 KLIDSKDFVLGFLAGLSVLLLNT--GSLITAKPLISYFNLL 230
>SPAC6G9.03c |mug183||histone chaperone
Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -3
Query: 233 NYKTESGLRTGHIFVLRCEVMING*RSRCIIDAACFNHLSSESYILLQFTVHY 75
NYK + G H+F LR ++ + I+ A H S + + FTV++
Sbjct: 206 NYKAKDG----HLFFLRTGILWGFRKPILFIELASIQHFSYSNVLQRTFTVNF 254
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = -2
Query: 504 RLLCNGTCDEFSCISAYPQAYRIGVLVRPIHNKTTQANCIR---RCTEGIRLKLCVVGDR 334
++L + ++ SCI + IG L I ++ IR C +GI ++ + D+
Sbjct: 34 KILHDSVGNKISCIGKSTKRIAIGTLDGRIVILNSRLQLIRDFYACEQGIVQQIYITADQ 93
Query: 333 FS*CCV 316
+ CCV
Sbjct: 94 SALCCV 99
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 111 AAEMIEASSVDNATAPLPINHDFTPQDEDMARSEATFRFIVQN 239
A + + ASS+DN++ P D E++AR+ + + + QN
Sbjct: 133 AIDALRASSIDNSSDPAKFRSDL----ENIARTTLSSKILSQN 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,977
Number of Sequences: 5004
Number of extensions: 61790
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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