Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21j05
         (322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   1.6  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    24   5.0  
SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ...    24   6.6  

>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +1

Query: 133 SKLTKVTFTNNAETAFQNSECYAN*GILLLKCIFFVN*RGLYV*VELLDSY 285
           SK+T      N E  F+N E Y   G +L+    F +  G+Y  +++L SY
Sbjct: 49  SKITDEEINKNLELRFRNGEIYTYIGHVLISVNPFRD-LGIYT-MDILKSY 97


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 25  TCFFINMLECLT*TRNLIKF 84
           TC+  + L+CLT TR L  F
Sbjct: 319 TCYMNSALQCLTHTRELRDF 338


>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 244

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 170 SALFVNVTFVSFDLRQINSA 111
           + LFVNV  V FD R   SA
Sbjct: 115 TGLFVNVALVDFDFRSEASA 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,133,520
Number of Sequences: 5004
Number of extensions: 18857
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)