Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21j05
         (322 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    28   1.7  
Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical pr...    26   7.0  
U80842-8|AAB37951.1|  244|Caenorhabditis elegans Hypothetical pr...    26   7.0  
Z71262-5|CAA95818.1|  606|Caenorhabditis elegans Hypothetical pr...    25   9.2  
Z66563-3|CAM33503.1|   51|Caenorhabditis elegans Hypothetical pr...    25   9.2  
U53150-2|AAV28350.1|  580|Caenorhabditis elegans Hypothetical pr...    25   9.2  

>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
            C23F12.1b protein.
          Length = 2747

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +1

Query: 124  CRKSKL--TKVTFTNNAETAFQNSECYAN 204
            C+KS +  T+ +F+NNAE    NS+ Y+N
Sbjct: 1950 CQKSHIPKTRASFSNNAEFNSPNSDKYSN 1978


>Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical
           protein K09E4.2 protein.
          Length = 640

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 82  FMLLNFIVIKAELICRKSKLTKVTFTN-NAETAFQNSECYAN*GIL 216
           F  +  +++ AE +     + KV +T  +  T  Q  ECY N GIL
Sbjct: 20  FRAVAALLMIAEAVLSHLVILKVNYTEIDWSTYMQQVECYVNKGIL 65


>U80842-8|AAB37951.1|  244|Caenorhabditis elegans Hypothetical
           protein ZC239.12 protein.
          Length = 244

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 183 LKRGLRIVCKRYFCKL*LTTNQFSFYHD 100
           LK GL  +CKR  CK+      F  YHD
Sbjct: 92  LKEGLMELCKRSTCKM----RTFDSYHD 115


>Z71262-5|CAA95818.1|  606|Caenorhabditis elegans Hypothetical
           protein F22D6.6 protein.
          Length = 606

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 121 ICRKSKLTKVTFTNNAETAFQNSEC 195
           +CR ++L KV F ++A  A+   EC
Sbjct: 117 VCRNNELLKVFFIDDAVIAWVQPEC 141


>Z66563-3|CAM33503.1|   51|Caenorhabditis elegans Hypothetical
           protein F46C3.6 protein.
          Length = 51

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 70  NLIKFMLLNFIVIKAELICRKSKL 141
           NL+ F+L+ FIV  A + CR+ ++
Sbjct: 2   NLVFFILIVFIVFNAGVDCRRRRM 25


>U53150-2|AAV28350.1|  580|Caenorhabditis elegans Hypothetical
           protein F20A1.4 protein.
          Length = 580

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 313 CIYSFVLFFNNYLTIQPKHIV 251
           CI SF+   N+YL   P HIV
Sbjct: 96  CILSFLSRLNHYLDPDPVHIV 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,199,747
Number of Sequences: 27780
Number of extensions: 105458
Number of successful extensions: 210
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)