Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21j05
         (322 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   3.7  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   4.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   4.8  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   4.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +1

Query: 97  FIVIKAELICRKSKLTKVTFTNNAETAFQNSECY 198
           F+V+ A+ +    K  + T  ++  T   N+ CY
Sbjct: 286 FLVVTAQPVHSAYKAPEETIISSVFTTRHNATCY 319


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 244 N*QKKCISIREFLN 203
           N + KC+  RE+LN
Sbjct: 340 NTKAKCLQFREYLN 353


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -1

Query: 271 IQPKHIVHAN*QKK 230
           +QP+H+V+ N Q++
Sbjct: 103 LQPQHVVYGNPQQQ 116


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 162 VCKRYFCKL*LTTNQFSFYH 103
           +CKR +  L    N  S YH
Sbjct: 37  ICKRVYSSLNSLRNHKSIYH 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,244
Number of Sequences: 438
Number of extensions: 1187
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)