Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21j02
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 85 1e-17
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 84 2e-17
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 75 9e-15
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 53 4e-08
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 51 1e-07
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 50 4e-07
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 48 9e-07
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 48 1e-06
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 48 1e-06
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 47 3e-06
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 45 8e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 44 1e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 44 2e-05
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 44 3e-05
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 43 4e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 42 8e-05
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 42 1e-04
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 41 1e-04
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 40 2e-04
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 40 3e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 39 7e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 7e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 38 0.001
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 38 0.002
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 37 0.002
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 37 0.003
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 37 0.003
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 36 0.004
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 36 0.005
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 36 0.007
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 35 0.009
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 35 0.009
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 35 0.009
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.036
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 33 0.048
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 32 0.084
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 31 0.19
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 30 0.34
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 29 0.45
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 27 2.4
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 26 4.2
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 4.2
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 26 5.5
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu... 25 7.3
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 25 9.6
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 25 9.6
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 84.6 bits (200), Expect = 1e-17
Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 6/158 (3%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE--PG-NDPYAFLEFTCHXXXXXXXXX 371
TL++G L+P VTE F+ ++ +G K+IR G N Y F+EF
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSM 153
Query: 372 MNKRVVLDKEM-KVNWATSPGNQPKT-DTSNHHHIFVGDLSPEIETNILREAFAP-FGEI 542
NK + + K+NWA+ G + K+ ++ + IFVGDLSP + + FA +
Sbjct: 154 NNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSC 213
Query: 543 SNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQ 656
+ +I+ DPQT S+GY FV F + D ++A+ M GQ
Sbjct: 214 KSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQ 251
Score = 44.4 bits (100), Expect = 1e-05
Identities = 52/181 (28%), Positives = 76/181 (41%), Gaps = 30/181 (16%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFG-QIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXX 368
+++VG+L P+V E + +LF + K KI+ +P + Y F+ FT
Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALA 246
Query: 369 XMNKRVVLDKEMKVNWAT--------SPGN---------------QPK---TDTSNHHHI 470
M ++ D+ ++V AT SP N QP DT+N +
Sbjct: 247 EMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANST-V 305
Query: 471 FVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 650
FVG LS + L+ F FGEI +I KG FV FV + AE AI +
Sbjct: 306 FVGGLSKFVSEEELKYLFQNFGEIVYVKIP------PGKGCGFVQFVNRQSAEIAINQLQ 359
Query: 651 G 653
G
Sbjct: 360 G 360
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 83.8 bits (198), Expect = 2e-17
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 3/154 (1%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEFTCHXXXXXXXXX 371
+LYVG LDPSVTE L LF IG V ++ R+ + YA++ F
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 372 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 551
+N ++ + ++ W+ + K T N +F+ +L P I+ L + F+ FG+I +C
Sbjct: 141 LNYTLIKGRPCRIMWSQRDPSLRKMGTGN---VFIKNLDPAIDNKALHDTFSAFGKILSC 197
Query: 552 RIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNG 653
++ D + +KGY FV F A AAI+ +NG
Sbjct: 198 KVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNG 230
Score = 66.1 bits (154), Expect = 4e-12
Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 15/164 (9%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCHXXXXXXXXXMN 377
+Y+ NLD +TE LFGQ G++ ++++ + P + F+ + H +N
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 378 KRVVLDKEMKVNWATSPG----------NQPKTDTSNHH---HIFVGDLSPEIETNILRE 518
+ K++ V A Q K + N + ++F+ +L E++ L+
Sbjct: 323 DKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKA 382
Query: 519 AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 650
F+ FG I++ +I+ D Q KSKG+ FV + +A A+ MN
Sbjct: 383 EFSAFGTITSAKIMTDEQG-KSKGFGFVCYTTPEEANKAVTEMN 425
Score = 62.1 bits (144), Expect = 7e-11
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 5/154 (3%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKI-IREPGNDP-YAFLEFTCHXXXXXXXXXMN 377
+++ NLDP++ L F G + CK+ + E GN Y F+ F +N
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
Query: 378 KRVVLDKEMKVNWATSPGN-QPKTDT--SNHHHIFVGDLSPEIETNILREAFAPFGEISN 548
++ DK++ V S Q K + +N ++++ +L EI + F FGEI++
Sbjct: 230 GMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITS 289
Query: 549 CRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 650
+V+D Q K +G+ FV++ A+ A+ +N
Sbjct: 290 LSLVKD-QNDKPRGFGFVNYANHECAQKAVDELN 322
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 74.9 bits (176), Expect = 9e-15
Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEFTCHXXX 353
D + T+Y+GNLD VT+ L L Q G V I R+ ++ + F EF
Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65
Query: 354 XXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPF 533
+N+ + K ++VN A+ +T ++FVG+L P ++ +L + F+
Sbjct: 66 EYACQILNQVKLFGKPIRVNRASQDRG---VNTLIGANLFVGNLDPLVDERVLYDTFSAL 122
Query: 534 GEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQ 656
G++ V + +SKGY FVS+ A+AAI+AMN Q
Sbjct: 123 GQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQ 163
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 52.8 bits (121), Expect = 4e-08
Identities = 23/77 (29%), Positives = 47/77 (61%)
Frame = +3
Query: 426 PGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVS 605
P + P+ + + +FV ++ ++ + L++ F+ FG +++ RI+R+P T S+G+ F+S
Sbjct: 89 PQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLS 148
Query: 606 FVKKADAEAAIQAMNGQ 656
F +A +AI +N Q
Sbjct: 149 FSTVEEATSAIDNLNSQ 165
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 51.2 bits (117), Expect = 1e-07
Identities = 31/79 (39%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +3
Query: 423 SPGNQPKTDTSNHHHIFVGDLSPEI--ETNILREAFAPFGEISNCRIVRDPQTLKSKGYA 596
+P + P D N +FV +L I T L E F+ FG I +C + P T SKGY
Sbjct: 409 TPTSTPTIDPCN---LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYG 465
Query: 597 FVSFVKKADAEAAIQAMNG 653
FVSF +A AI +NG
Sbjct: 466 FVSFSHPFEAVQAINTLNG 484
Score = 39.1 bits (87), Expect = 6e-04
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIV--RDPQTLKSKG---YAFVSFVKKADAEA 632
I+VG+L +++ L E F PFG S ++ + ++ SK +AF++F K A+
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 633 AIQAMNG 653
AI ++NG
Sbjct: 82 AIASLNG 88
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 49.6 bits (113), Expect = 4e-07
Identities = 26/73 (35%), Positives = 41/73 (56%)
Frame = +3
Query: 435 QPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVK 614
+P D++ +FVG LS ++ L + F +G I R++ D Q+ +SKGY +V F
Sbjct: 254 KPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFET 313
Query: 615 KADAEAAIQAMNG 653
A+AA+ A NG
Sbjct: 314 PEAAKAAV-AANG 325
Score = 41.5 bits (93), Expect = 1e-04
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 647
+FVG+LS + L AF G+I + R+ DPQ+ + KG+ +V+F A+ ++ M
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-M 426
Query: 648 NG 653
NG
Sbjct: 427 NG 428
Score = 36.3 bits (80), Expect = 0.004
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +3
Query: 165 R*ANMGDE-SHPK-TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 305
R N GD+ S P T++VGNL + TE L T FG GD++ ++ +P
Sbjct: 353 RAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDP 401
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 48.4 bits (110), Expect = 9e-07
Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 7/157 (4%)
Frame = +3
Query: 198 KTLYVGNLDPS--VTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXX 371
KT+YVGNL P+ + E+ C + G ++ I+ E +FL+ H
Sbjct: 115 KTVYVGNLPPNTPIDEILSCV---RTGPIESAWILPEKNCAFISFLD-PSHATAFFQDAA 170
Query: 372 MNKRVVLDKEMKVNWATSPGNQPKT-----DTSNHHHIFVGDLSPEIETNILREAFAPFG 536
+ + + E+KV W + + + ++F+G+L I + +RE PFG
Sbjct: 171 LKRLTIRGTEVKVGWGKNSASNSSVLLAVQQSGACRNVFLGNLPNGITEDEIREDLEPFG 230
Query: 537 EISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 647
I +IV + + AFV F+ A A A+Q +
Sbjct: 231 PIDQIKIVTE------RNIAFVHFLNIAAAIKAVQEL 261
Score = 33.9 bits (74), Expect = 0.021
Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 5/152 (3%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 377
+T+Y+GN+ T +C + G + + ++E F++ ++
Sbjct: 323 RTVYIGNIHADTTIEEICNAV-RGGLLHNIRYLQEKHICFVTFVD-PVSAFRFFEMSNIH 380
Query: 378 KRVVLDKEMKVNWATSPGNQPKTDT-----SNHHHIFVGDLSPEIETNILREAFAPFGEI 542
V+ ++ +K+ W G P +I++G+ + L+E F FGEI
Sbjct: 381 GLVIRNRRLKIGWGKHSGPLPSNIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEI 440
Query: 543 SNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 638
R+ K AFV+F A A AI
Sbjct: 441 EYVNFFRE------KNCAFVNFTSLASAINAI 466
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 48.0 bits (109), Expect = 1e-06
Identities = 38/170 (22%), Positives = 74/170 (43%), Gaps = 13/170 (7%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEFTCHXXX 353
+E +T++V L +T L F Q G V+ +I+R+ + A++EF CH
Sbjct: 235 EERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF-CHEDS 293
Query: 354 XXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSN----------HHHIFVGDLSPEIET 503
++ + +L + V + N+ + + H + V ++ +
Sbjct: 294 VQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTD 353
Query: 504 NILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNG 653
++ F PFG+I + RD Q +SKG+ ++ + A A++ MNG
Sbjct: 354 EDVKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQYRNPISARNALEKMNG 402
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/63 (33%), Positives = 37/63 (58%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 647
+FV L+ + + L + F G + + +IVRD + +SKG A+V F + +AAI A+
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI-AL 300
Query: 648 NGQ 656
+G+
Sbjct: 301 SGK 303
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 48.0 bits (109), Expect = 1e-06
Identities = 23/61 (37%), Positives = 38/61 (62%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 647
+ VG+L+P + ++L AF PFGEI + + R + + + YAFV F + DA+ A++ M
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAV-DRSYAFVEFDEPEDAKEAMENM 66
Query: 648 N 650
N
Sbjct: 67 N 67
Score = 37.5 bits (83), Expect = 0.002
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +3
Query: 186 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR-EPGND-PYAFLEFTCHXXXXX 359
E T++VGNL PSVTE L F G++ + R E D YAF+EF
Sbjct: 2 ERRKATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKE 61
Query: 360 XXXXMNKRVVLDKEMKVN 413
MN ++ D+ ++V+
Sbjct: 62 AMENMNYSILCDRCIRVS 79
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 46.8 bits (106), Expect = 3e-06
Identities = 29/89 (32%), Positives = 46/89 (51%)
Frame = +3
Query: 372 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 551
+N + +D+ ++V+ + P Q DT +FVG+L+ E E L F G I
Sbjct: 245 LNGTMFMDRHLRVDSVSHPMPQ---DTKRC--VFVGNLAFEAEEEPLWRYFGDCGSIDYV 299
Query: 552 RIVRDPQTLKSKGYAFVSFVKKADAEAAI 638
RIVRDP+T KG+A++ F + A+
Sbjct: 300 RIVRDPKTNLGKGFAYIQFKDTMGVDKAL 328
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEF 335
+ ++VGNL E L FG G + +I+R+P + +A+++F
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQF 318
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 45.2 bits (102), Expect = 8e-06
Identities = 18/47 (38%), Positives = 32/47 (68%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 608
+F+G L+ E + LR+ F FGE+ +C ++RD T +S+G+ F++F
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTF 211
Score = 42.7 bits (96), Expect = 4e-05
Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 1/146 (0%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 383
+++G L+ T+ L F Q G+V C ++R+ F M+K
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKE 224
Query: 384 VVLDKEMKVNWATSPGNQ-PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 560
LD ++ P P+ + +FVG + + R F FG + + ++
Sbjct: 225 HHLDGKI-----IDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLM 279
Query: 561 RDPQTLKSKGYAFVSFVKKADAEAAI 638
D T + +G+ FV++ ++ EA +
Sbjct: 280 MDKDTGRPRGFGFVTYENESAVEATM 305
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.4 bits (100), Expect = 1e-05
Identities = 21/67 (31%), Positives = 39/67 (58%)
Frame = +3
Query: 447 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 626
D S+ +I++G+L ++ + + F+ FGE + +VRD +T KSKG+AF+ + +
Sbjct: 26 DYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRST 85
Query: 627 EAAIQAM 647
A+ M
Sbjct: 86 VLAVDNM 92
Score = 31.1 bits (67), Expect = 0.15
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +3
Query: 183 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGNDP-YAFLEFTCHXXX 353
D S +Y+GNLD + E + +F + G+ ++R E G +AFL++
Sbjct: 26 DYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRST 85
Query: 354 XXXXXXMNKRVVLDKEMKVNWATS 425
M +LD+ ++V+ S
Sbjct: 86 VLAVDNMTNVKLLDRLVRVDHVAS 109
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 44.0 bits (99), Expect = 2e-05
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAA 635
+FV L+P + L F+ FG+I +C+++RD +T S YAF+ F K E A
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKA 301
Score = 32.3 bits (70), Expect = 0.063
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGND-PYAFLEFTCHXXXXXXXXXM 374
L+V L+P + L +F + G + C++IR E G+ YAF+EF M
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 375 NKRVVLDKEMKVNWATSPGNQPKTDTSN 458
++ D + V+++ S + SN
Sbjct: 306 QNVLIDDSRIHVDFSQSVARYRQYYNSN 333
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 43.6 bits (98), Expect = 3e-05
Identities = 22/62 (35%), Positives = 35/62 (56%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 647
+F+ LS + + + + F +G I R+VR+ T KS GYAFV F ++ D + A +A
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 648 NG 653
G
Sbjct: 162 AG 163
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 42.7 bits (96), Expect = 4e-05
Identities = 21/67 (31%), Positives = 37/67 (55%)
Frame = +3
Query: 456 NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAA 635
NH +FVG+L ++ L +AF+ + + ++VRD + K++G+ FVSF A
Sbjct: 28 NHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREG-KTRGFGFVSFKDSDQFLKA 86
Query: 636 IQAMNGQ 656
+ NG+
Sbjct: 87 WREKNGK 93
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 41.9 bits (94), Expect = 8e-05
Identities = 24/76 (31%), Positives = 38/76 (50%)
Frame = +3
Query: 429 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 608
GN K T ++VG+LS ++ L+E G + NC I+ P L SKG A + +
Sbjct: 56 GNGQKY-TQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGL-SKGCAIIEY 113
Query: 609 VKKADAEAAIQAMNGQ 656
+A AI+ ++ Q
Sbjct: 114 STAEEARTAIKTLSNQ 129
Score = 39.5 bits (88), Expect = 4e-04
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 647
I+VG+L L + F G + RI +P T +SKG+ V F + DA ++I+ +
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
Query: 648 NG 653
NG
Sbjct: 341 NG 342
Score = 30.3 bits (65), Expect = 0.26
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 305
+ +YVGNL V L GQ+G+V C+I+ P
Sbjct: 66 RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLP 101
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 305
+YVGNL + ++ L LF IG V +I EP
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP 315
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 41.5 bits (93), Expect = 1e-04
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +3
Query: 174 NMGDESHP-KTLYVGNLDPSVTEVFLCTLFG-QIGDVKGCKIIREPGNDPYAFLEF 335
N D++ P T+YVGNL PS +E L LF Q+G + C R GN P F+EF
Sbjct: 417 NPADQNPPCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLC--FRTKGNGPMCFVEF 470
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 41.1 bits (92), Expect = 1e-04
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 647
+FVG++ ++ + E F G + ++V DP+T KGY F F A++ +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 648 N 650
N
Sbjct: 69 N 69
Score = 35.5 bits (78), Expect = 0.007
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEFTCHXXXXXXXXXM 374
++VGN+ V+E + +F Q+G VK K++ +P Y F EF +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 375 NKRVVLDKEMKVNWATSPGNQPKTDTS 455
N + ++++V + P N P+ + S
Sbjct: 69 NNSELGPRKIRVEF---PSNDPRRNQS 92
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 195 PKTLYVGNLDP-SVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 335
P +++VG LDP + T L LF + G V CKII + +AFL F
Sbjct: 364 PYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRF 411
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 39.9 bits (89), Expect = 3e-04
Identities = 17/63 (26%), Positives = 36/63 (57%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 647
I++ +L + + + E PFG++ + +++++ SKG+ F F +DAE AI +
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371
Query: 648 NGQ 656
+G+
Sbjct: 372 DGK 374
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 38.7 bits (86), Expect = 7e-04
Identities = 18/63 (28%), Positives = 37/63 (58%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 647
+FV +L+ + + + L F+ G I + +V +P+T +++GY FV+F DA+ A + +
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 648 NGQ 656
+
Sbjct: 67 KNK 69
Score = 34.7 bits (76), Expect = 0.012
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 641
+FV +L E L F FG ++ ++V+DP T +S G F+ F + D + ++
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLE 336
Score = 32.3 bits (70), Expect = 0.063
Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 16/167 (9%)
Frame = +3
Query: 201 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXXX 371
TL+V NL + L F +G +K ++ P N Y F+ F+
Sbjct: 6 TLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKE 65
Query: 372 MNKRVVLDKEMKVNWATSPGNQPKTDTS------------NHHHIFVGDLSPEIET-NIL 512
+ + + + +++++AT P + + DT N + + +L I+ L
Sbjct: 66 LKNKKLHGRILRLDFAT-PRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHL 124
Query: 513 REAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNG 653
F+ FG++ +I + G+AFV + AE A+ ++NG
Sbjct: 125 EPHFSKFGKVREIKIPTKGGG-RMCGFAFVWMKDRKAAEEAMNSLNG 170
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 38.7 bits (86), Expect = 7e-04
Identities = 23/62 (37%), Positives = 31/62 (50%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 647
+FVG L+ + L+ F PFG I N +I KG FV + +K+ AE AI M
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIP------FGKGCGFVQYSEKSAAEKAINTM 352
Query: 648 NG 653
G
Sbjct: 353 QG 354
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +3
Query: 474 VGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 644
V +LS + LR+ F FG I + +D +T ++KG+AFVS+ D + AI+A
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYY---DRDCAIKA 259
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 37.5 bits (83), Expect = 0.002
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Frame = +3
Query: 408 VNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI----VRDPQT 575
V+ + N P ++ +FVG LS + + +R F G + I VR
Sbjct: 27 VHASAEQSNTP-AQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTR 85
Query: 576 LKSKGYAFVSFVKKADAEAAIQAMNGQ 656
L G AFV+F + D + AI+ +NG+
Sbjct: 86 LVPSGIAFVTFNNQEDVDKAIETLNGK 112
Score = 29.1 bits (62), Expect = 0.59
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 579 KSKGYAFVSFVKKADAEAAIQAMNGQ 656
+ +G+ FVSF D AI+ MNG+
Sbjct: 256 RGRGFGFVSFANAEDQSRAIEEMNGK 281
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/61 (26%), Positives = 35/61 (57%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 647
++VG++ E+ + + F G + + ++V DP++ + KGY F + A A +A++ +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 648 N 650
N
Sbjct: 67 N 67
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP-GNDP--YAFLEF 335
+YVGN+ + E + +F Q G VK +++ +P P Y F E+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 36.7 bits (81), Expect = 0.003
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Frame = +3
Query: 408 VNWATSPGNQPKTDTS--NHHHIFVGDLSPEIET--NILREAFAPFGEISNCRIVRDPQT 575
V+W + + P S + +++V +L + T + L + F+PFG I + + P +
Sbjct: 362 VHWDSLRESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNS 421
Query: 576 LKSKGYAFVSFVKKADAEAAIQAMNG 653
SKGY FV+F + A A +NG
Sbjct: 422 GISKGYGFVAFRQIEAAVRAKDTLNG 447
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 186 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVK 281
E T+YVGN+D +++ + F + G V+
Sbjct: 13 EDESSTIYVGNIDSRLSDEEIIKHFSKYGQVE 44
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 611
+FVG+L + L+ F G++ + RI D + + KGYAFV F+
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFI 141
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 36.3 bits (80), Expect = 0.004
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAA 635
+FV ++SP + + LR F FGE+ + + +P T S G +SF K++ A
Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSISVA 151
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 35.9 bits (79), Expect = 0.005
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 647
+FVG+L E L+E F G+I R++ T K KG+ FV F D + ++AM
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF---PDIDTCMKAM 286
Score = 29.5 bits (63), Expect = 0.45
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII 296
L+VGNLD T+ L FGQ+G ++ +++
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLM 260
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 35.5 bits (78), Expect = 0.007
Identities = 22/68 (32%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Frame = +3
Query: 459 HHHIFVGDLSP--EIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEA 632
++ ++VG ++P +IE + R FA +G+I R+ L S+G AF++++ +A+A+
Sbjct: 173 NYTLYVGGITPTDDIEEIVSRH-FAEWGDIERIRV------LNSRGIAFITYLNEANAQF 225
Query: 633 AIQAMNGQ 656
A +AM Q
Sbjct: 226 AKEAMAHQ 233
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 35.1 bits (77), Expect = 0.009
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +3
Query: 453 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEA 632
S +F+ +L+ + L+ F PFG++ + D +T KG+A++ F DA+
Sbjct: 320 SETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDF---HDADD 376
Query: 633 AIQA 644
A++A
Sbjct: 377 AVRA 380
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +3
Query: 537 EISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 650
EI++ + + + + S+ +AF+ F + DA+ AI+ +N
Sbjct: 31 EITDVSVAKTKEGV-SRRFAFIGFKNEEDADKAIRYLN 67
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 35.1 bits (77), Expect = 0.009
Identities = 19/69 (27%), Positives = 35/69 (50%)
Frame = +3
Query: 444 TDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAD 623
++T+ ++F+G+L + EAF FG+I + +I L K AFV F+ D
Sbjct: 293 SNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKI------LSKKNIAFVHFLNIRD 346
Query: 624 AEAAIQAMN 650
A ++ ++
Sbjct: 347 AIKVVRTLS 355
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 35.1 bits (77), Expect = 0.009
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +3
Query: 450 TSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAE 629
TS ++++ L P L FG++S+ + + D +T KGY F F ++ A
Sbjct: 292 TSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSAL 351
Query: 630 AAIQAM 647
I AM
Sbjct: 352 ICISAM 357
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.1 bits (72), Expect = 0.036
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKS-KGYAFVSF 608
I+VG LS IE++ L F+ FG +SN I+ + + + +A+++F
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNF 54
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 32.7 bits (71), Expect = 0.048
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 522 FAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQ 656
F PFG + C I P+T S+ +AFV + DAE A ++G+
Sbjct: 27 FEPFGPLIRCDIPI-PRTRTSRPFAFVEYEDSRDAEDAYYEVHGR 70
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 31.9 bits (69), Expect = 0.084
Identities = 30/155 (19%), Positives = 68/155 (43%), Gaps = 4/155 (2%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKI--IREPGNDPYAFLEFTCHXXXXXXXXXMN 377
LYV N P+ E+ + LF G+V + +R N + +++ ++
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMR-KPDEAHNALQLH 726
Query: 378 KRVVLDKEMKVNWATSPGNQ-PKTDTSNH-HHIFVGDLSPEIETNILREAFAPFGEISNC 551
K+++ +K + + P + P++ ++V ++ ++ + F +G++ +
Sbjct: 727 KKLLEEKYPIQVFISDPLRRTPRSGAVYEGRELYVTNIDFKVNEKDVETFFRDYGQVESV 786
Query: 552 RIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQ 656
RI + + + KG+ +V DAE A+ A Q
Sbjct: 787 RIPK--RFNQHKGFGYVVMTTNQDAENALSAAGKQ 819
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 30.7 bits (66), Expect = 0.19
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 647
+F+ +LS +I + + F +G + R +R T++++G AFV + DA A + +
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPV---RQIRLGNTVQTRGTAFVVYENVQDARRACEKL 70
Query: 648 NG 653
+G
Sbjct: 71 SG 72
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 29.9 bits (64), Expect = 0.34
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 608
++VG++ + L+ FA G ++ I+ D T KG+A++ F
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEF 103
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +3
Query: 198 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFT 338
+++YVGN+D SVT L + F G V I+ + G+ +A++EF+
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFS 104
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 29.5 bits (63), Expect = 0.45
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +3
Query: 465 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 644
++ + +L+P ++ + FGEI NC+ V D Q K A V F A A+ +Q
Sbjct: 101 NVVIENLAPGTSSDDVAATLLNFGEILNCQ-VNDSQ---GKVRASVRFSTLASAQQVVQK 156
Query: 645 MNG 653
++G
Sbjct: 157 LDG 159
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 507 ILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNG 653
IL F +G++ + V+ +TL+ +G AFV F +A A++ + G
Sbjct: 45 ILEHLFGSYGKVID---VQARKTLRMRGQAFVVFDNLENASRALKDLQG 90
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 204 LYVGNLDPSVTEVFLCTLFGQIGDVKG 284
L+V NL V L LF ++GDVKG
Sbjct: 197 LFVTNLPRIVPYATLLELFSKLGDVKG 223
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = +3
Query: 468 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 647
+FVG + P+ + + F +G+I +C+++ G+ FV DA +
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVEDARDARDIVNDF 57
Query: 648 NGQ 656
G+
Sbjct: 58 QGK 60
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 533 W*D-IELSHSTRSSNAQIQGLCFCIICKES 619
W D + L T +S ++I G FC +C+E+
Sbjct: 483 WKDMLILKDQTDTSESRITGFYFCCLCREN 512
>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 531 FGE--ISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 647
FGE I RI++D ++ K A ++ +++ D +QAM
Sbjct: 436 FGERAIRLLRIIKDKGKIEEKQLANIALLRQRDLRTVLQAM 476
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 25.0 bits (52), Expect = 9.6
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +3
Query: 393 DKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRD 566
DK M+ + A + QP D HI+ + + N RE F + + R VRD
Sbjct: 878 DKIMEADKARANFTQPGGDHLTLLHIWNEWVDTDFSYNWARENFLQYKSLCRARDVRD 935
>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 204
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = -3
Query: 193 WL--SSPILAYR-NLSITFLTSMNTNIN 119
WL ++ ILAYR NL FLT + N+N
Sbjct: 134 WLLKNASILAYRRNLKYIFLTVFSANLN 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,901
Number of Sequences: 5004
Number of extensions: 55508
Number of successful extensions: 209
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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