Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21i23
(491 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 1.5
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 27 1.5
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 27 2.0
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 26 2.7
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 26 2.7
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 26 3.5
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 3.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 3.5
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 4.7
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 25 8.2
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.1 bits (57), Expect = 1.5
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 23 EYSTTKSNLFIVHF*YRSSKRETVILEDRTNVFLMIFEHGRQRCRTEEQPYI 178
E ST+ N +I + S +T+ +ED+T+ + FEH + E P I
Sbjct: 197 ETSTSVENAYITN----SQYNDTLDMEDQTSDLITTFEHENEDHEVHEVPSI 244
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.1 bits (57), Expect = 1.5
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +3
Query: 201 CKLQNFTPL-NNVLPTGNGKILDF 269
CK+ +FTPL N + P G+++D+
Sbjct: 99 CKVDDFTPLPNEIQPIQRGRVVDW 122
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 2.0
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 153 VEPKSSRIFQQCYAKCCKLQNFTPLNNVLPTGN 251
++PKS F Q C QN+ LN GN
Sbjct: 128 IKPKSDARFSQGLCTACTFQNYPDLNTCEICGN 160
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 26.2 bits (55), Expect = 2.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 323 AQSVQYRRPISILNSIDAEIQYFSIPGWQHI 231
A S++ R P++I DA+I S+P H+
Sbjct: 484 ASSIRRRHPVNIQEDEDADISTVSLPEAAHL 514
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 2.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 375 TVLEQIDCDRLAKTVNKRAVILTNFMLNNLVEAISQLLS 491
TV +D RL + + + TNF+ L+EA SQL+S
Sbjct: 416 TVFASLDLSRLQEITHSDSK--TNFIPKELIEARSQLIS 452
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 25.8 bits (54), Expect = 3.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 255 KILDFCVDRIKYADWPPILNALSCDLSLHSIS 350
+ L + VD +Y D P + S D+S H++S
Sbjct: 211 RTLPWAVDPYRYGDPDPKRTSTSADISQHTVS 242
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 3.5
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +3
Query: 150 GVEPKSSRIFQQCYAKCCKLQNFTPLNNVLPTGNGKILDFCV 275
G+E K R +Q + L N L VLPTG GK L F +
Sbjct: 1185 GLEAKF-RSLKQFQSVYFSLLNRMNLITVLPTGGGKSLSFLI 1225
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 3.5
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +3
Query: 150 GVEPKSSRIFQQCYAKCCKLQNFTPLNNVLPTGNGKILDFCV 275
G+E K R +Q + L N L VLPTG GK L F +
Sbjct: 1185 GLEAKF-RSLKQFQSVYFSLLNRMNLITVLPTGGGKSLSFLI 1225
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.4 bits (53), Expect = 4.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 316 AFSIGGQSAYLILSTQKSNIFPFPVGSTL 230
A + G+ +LILST SN FP+ S +
Sbjct: 947 AVFVTGRKPFLILSTLHSNAKFFPISSNI 975
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 24.6 bits (51), Expect = 8.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 243 TGNGKILDFCVDRIKYADWPPILN 314
TG+GK L +C+ I + + P+L+
Sbjct: 168 TGSGKTLSYCLPAIVHINAQPLLS 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,884
Number of Sequences: 5004
Number of extensions: 38923
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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