Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21i23
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0412 + 2944652-2944977,2945406-2945517,2945569-2945670           31   0.50 
01_05_0387 - 21695277-21695351,21696186-21696228,21696325-216964...    29   1.5  
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874...    29   2.0  
02_04_0036 + 19097693-19098106                                         28   4.7  
11_01_0649 - 5259038-5259195,5259824-5259887,5260446-5260512,526...    27   8.2  

>06_01_0412 + 2944652-2944977,2945406-2945517,2945569-2945670
          Length = 179

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 341 FYFYTMQAACENCTRTNRLRSTSKNCKQTSCDFNQ 445
           F FY  Q +          RST KNCK  +C FN+
Sbjct: 112 FIFYVFQNSSSTTYLVAVARSTQKNCKLQACRFNK 146


>01_05_0387 -
           21695277-21695351,21696186-21696228,21696325-21696454,
           21696812-21697028,21697202-21697248,21698132-21698228,
           21698637-21698687,21698788-21698919,21699345-21699499,
           21700461-21700534,21700566-21700730,21701368-21701420
          Length = 412

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 267 FCVDRIKYADWPPI 308
           FC++  KYADWPP+
Sbjct: 313 FCINDNKYADWPPL 326


>04_04_0585 -
           26386248-26386271,26386510-26386699,26387363-26387463,
           26387554-26387685,26387759-26387857,26387956-26388127,
           26388217-26388512,26388601-26388726,26388848-26389062,
           26389154-26389225,26389299-26389368,26389441-26389517,
           26389605-26389923,26390034-26390225,26390321-26390551,
           26390585-26390950,26392251-26392313,26392394-26392456,
           26392544-26392642,26393497-26393523,26394299-26394358,
           26395230-26396147,26396243-26397268
          Length = 1645

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 406 SRSQSICSSTVFTGCLHRIEIECRLKSQLKAFSIGGQSAYL 284
           SRSQS C S + TG + R++     K+ ++  S GG+  ++
Sbjct: 663 SRSQSTCRSDLLTGKMPRVQTSRLGKNPIEVDSDGGEDFHV 703


>02_04_0036 + 19097693-19098106
          Length = 137

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 208 SLQHLA*HCWNIRLLFGSTP 149
           + Q L  HCW + LLFG  P
Sbjct: 111 TFQQLGLHCWTLHLLFGFGP 130


>11_01_0649 -
           5259038-5259195,5259824-5259887,5260446-5260512,
           5260534-5260607,5260725-5261510,5262623-5262685
          Length = 403

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 189 YAKCCKLQNFTPLNNVLPTGNGKILDFCVDRIKYADW 299
           Y +C K  N   L+ +L   +G  LD CV R ++ DW
Sbjct: 51  YLRCVK-DNKEFLDRLLLLRDGAPLDTCVLRFRWLDW 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,556,914
Number of Sequences: 37544
Number of extensions: 224599
Number of successful extensions: 505
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)