Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21i23
         (491 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL353705-5|CAI40237.1|  689|Homo sapiens centrosomal protein 78k...    43   5e-04
AK022705-1|BAB14190.1|  665|Homo sapiens protein ( Homo sapiens ...    43   5e-04
BC128058-1|AAI28059.1|  722|Homo sapiens CEP78 protein protein.        40   0.004

>AL353705-5|CAI40237.1|  689|Homo sapiens centrosomal protein 78kDa
           protein.
          Length = 689

 Score = 43.2 bits (97), Expect = 5e-04
 Identities = 23/64 (35%), Positives = 32/64 (50%)
 Frame = +3

Query: 165 SSRIFQQCYAKCCKLQNFTPLNNVLPTGNGKILDFCVDRIKYADWPPILNALSCDLSLHS 344
           S+  F   Y   C LQN  PL  V       +LDF  DR++  DW P+L+ L  +  L  
Sbjct: 11  SAADFFSHYEYLCALQNSVPLPAVRACLREGVLDFNADRLRGVDWAPLLSTLKINKDLPL 70

Query: 345 ISIR 356
           +SI+
Sbjct: 71  VSIK 74


>AK022705-1|BAB14190.1|  665|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12643 fis, clone NT2RM4001969, moderately
           similar to R.norvegicus mRNA for IP63 protein. ).
          Length = 665

 Score = 43.2 bits (97), Expect = 5e-04
 Identities = 23/64 (35%), Positives = 32/64 (50%)
 Frame = +3

Query: 165 SSRIFQQCYAKCCKLQNFTPLNNVLPTGNGKILDFCVDRIKYADWPPILNALSCDLSLHS 344
           S+  F   Y   C LQN  PL  V       +LDF  DR++  DW P+L+ L  +  L  
Sbjct: 11  SAADFFSHYEYLCALQNSVPLPAVRACLREGVLDFNADRLRGVDWAPLLSTLKINKDLPL 70

Query: 345 ISIR 356
           +SI+
Sbjct: 71  VSIK 74


>BC128058-1|AAI28059.1|  722|Homo sapiens CEP78 protein protein.
          Length = 722

 Score = 40.3 bits (90), Expect = 0.004
 Identities = 22/64 (34%), Positives = 31/64 (48%)
 Frame = +3

Query: 165 SSRIFQQCYAKCCKLQNFTPLNNVLPTGNGKILDFCVDRIKYADWPPILNALSCDLSLHS 344
           S+  F   Y   C LQN  PL  V       +LDF  D ++  DW P+L+ L  +  L  
Sbjct: 11  SAADFFSHYEYLCALQNSVPLPAVRACLREGVLDFNADGLRGVDWAPLLSTLKINKDLPL 70

Query: 345 ISIR 356
           +SI+
Sbjct: 71  VSIK 74


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,103,437
Number of Sequences: 237096
Number of extensions: 1268752
Number of successful extensions: 2087
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2087
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4423060356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)