Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21i22
(623 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 28 0.95
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 28 0.95
SPAC25G10.05c |his1||ATP phosphoribosyltransferase |Schizosaccha... 28 0.95
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 27 1.7
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr... 27 1.7
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 27 1.7
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|... 27 1.7
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 27 2.2
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr... 26 3.8
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom... 26 3.8
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 3.8
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 26 5.1
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 25 8.9
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo... 25 8.9
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 28.3 bits (60), Expect = 0.95
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 570 WRKCCAITKTV*RIWIVIANI*ADNYF 490
W CC T V IWIV+ + NY+
Sbjct: 346 WATCCIFTSFVFWIWIVLPGLYYQNYW 372
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 28.3 bits (60), Expect = 0.95
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 400 VLENEDVKEIQEQVLAN-LEKPNLPNVNVPEKIIV 501
V N D+KE++E ++AN + P PN P + V
Sbjct: 87 VFTNADLKEVRETIIANVIAAPARPNAIAPLDVFV 121
>SPAC25G10.05c |his1||ATP phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 28.3 bits (60), Expect = 0.95
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Frame = -1
Query: 434 SCISLTSSFSRTDVSSYCLESLSDAPCELLED----TVSGLSII*NVCIIRFIGVTTQSC 267
S I SF V + C ++DA +L+E SGL I V + V + +C
Sbjct: 155 SGIKTEISFVSGSVEASCALGIADAVVDLVESGETMRASGLKPIETVMSTSAVLVRSSNC 214
Query: 266 SSGLNPIGTKFYVRI 222
SS L P+ RI
Sbjct: 215 SSELEPLLQTIITRI 229
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 230 VRIIEKFYTYLFEDFLLEIYIKCP 159
+ IIEKF+ +E +L+++IK P
Sbjct: 324 IEIIEKFHAIAYEGSILQLFIKQP 347
>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
3|||Manual
Length = 269
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 1 KKKTICFSNHVSKNLTLFLIGF-CLMCMYVHLFLNVFY 111
K K F N+ + TLF GF CL+C +FL FY
Sbjct: 96 KYKDAFFKNYGAAEWTLF--GFWCLVCTLALIFLTYFY 131
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 1 KKKTICFSNHVSKNLTLFLIGF-CLMCMYVHLFLNVFY 111
K K F N+ + TLF GF CL+C +FL FY
Sbjct: 96 KYKDAFFKNYGAAEWTLF--GFWCLVCTLALIFLTYFY 131
>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 1 KKKTICFSNHVSKNLTLFLIGF-CLMCMYVHLFLNVFY 111
K K F N+ + TLF GF CL+C +FL FY
Sbjct: 96 KYKDAFFKNYGAAEWTLF--GFWCLVCTLALIFLTYFY 131
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 397 SVLENEDVKEIQEQVLANLEKPNLPNVNVPEKIIVCLDVCY 519
S+++ E + EI E+ +EKPN P++ V + ++ V +
Sbjct: 551 SIIDTERLLEIFEEKPTVVEKPNAPDLKVTQGKVIFSHVSF 591
>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
3|||Manual
Length = 220
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 15 LFFKSCFKKSYFIFNWILFNVYVCT-FVFKCILY 113
LFF+ + + WILF ++ T F+ ILY
Sbjct: 137 LFFRKASFTDFSLMGWILFGIWCLTCFLSSFILY 170
>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 431
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 39 KSYFIFNWILFNVYVCTFVFKCILYRGQVA 128
K FIF + +Y+C F+ I Y G ++
Sbjct: 63 KIIFIFQLSILTLYICCITFRFIRYPGTLS 92
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 19 FSNHVSKNLTLFLIGFCLMCMYVHLFLNVFYIADKWLIYDNKNLL 153
F +HVS +++ L + L +V F++ F A L+ NK++L
Sbjct: 1472 FLHHVSPDISTHLYKYYLRRNFVSSFIDAFSRAFSELLSSNKDVL 1516
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 388 EDTSVLENEDVKEIQEQVLANLEKP 462
E T++L N+D +Q Q LA E P
Sbjct: 345 EKTALLMNQDSNSVQPQALAAAESP 369
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 409 NEDVKEIQEQVLANLEKPNLPNVNVPEKIIVCLDVCYDNPNSLYRF 546
NE+ E E + KP ++VP+ I LD ++ + RF
Sbjct: 120 NEEENEEMESSINEEHKPGTNEIDVPKVIQNILDALHEEKDEQGRF 165
>SPAC8E11.01c
||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 550 DGTTFSPINMLKRILD 597
DG TF+PI+ RILD
Sbjct: 245 DGQTFTPIDSASRILD 260
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,645,473
Number of Sequences: 5004
Number of extensions: 55710
Number of successful extensions: 160
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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