Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21i22
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0671 - 5702051-5702159,5702493-5703216,5703910-5704476,570...    28   6.9  
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396           27   9.2  

>12_01_0671 -
           5702051-5702159,5702493-5703216,5703910-5704476,
           5704654-5704873,5705303-5707207
          Length = 1174

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/70 (28%), Positives = 35/70 (50%)
 Frame = +1

Query: 379 RQYEDTSVLENEDVKEIQEQVLANLEKPNLPNVNVPEKIIVCLDVCYDNPNSLYRFGDGT 558
           RQY + S   +E   ++ E +  NLE P+  N      + +  + C D+P ++Y F   T
Sbjct: 90  RQYSNKS---SESGMKLDEDI--NLESPHNSN-----GVGLKSNACQDDPVNIYNFQSST 139

Query: 559 TFSPINMLKR 588
           + +PI  + R
Sbjct: 140 SCTPIKRVAR 149


>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
          Length = 1357

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 406 ENEDVKEIQEQVLANLEKPNLPNVNVPEKIIVCLD---VCYDNPNS 534
           E+EDVKE  E +L N++  +  +     +I  C D    CY+  NS
Sbjct: 515 ESEDVKEKLEAILNNIDNDSSSDEEKNAEINCCQDSGCSCYEPDNS 560


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,615,681
Number of Sequences: 37544
Number of extensions: 273921
Number of successful extensions: 531
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)