Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21i19
(476 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce... 29 0.48
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 27 1.1
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ... 27 1.9
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 26 2.6
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 26 2.6
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 26 3.4
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 25 4.5
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 25 5.9
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 25 5.9
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 25 7.9
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 25 7.9
>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 28.7 bits (61), Expect = 0.48
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 98 DPNSTRTSLCPSTACDDLKGFLSDDCDDTIVGLSKLSLDDVEP 226
DP + + P AC DL G+ +D + + K +LD ++P
Sbjct: 225 DPTNAH-EIAPFIACGDLDGYDADATYPVEINMKKATLDVIQP 266
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 365 KIGEGVYGEVF-LWRARDGRARVMKIVPIAGHTKVNG 472
K+GEG +GEV+ R +DG+ +K I HT+ G
Sbjct: 41 KLGEGTFGEVYKSQRRKDGKVYALK--RILMHTEKEG 75
>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 26.6 bits (56), Expect = 1.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 365 KIGEGVYGEVFLWRARDGRARV 430
K+GEG Y VFL R ++ RV
Sbjct: 16 KVGEGTYAVVFLGRQKETNRRV 37
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 26.2 bits (55), Expect = 2.6
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +2
Query: 104 NSTRTSLCPSTACDDLKGFLSD---DCDDTIVGLSKLSLDDVEPEITVLGIHD 253
N +L AC+ L SD D DD+ G + L + E TVL +H+
Sbjct: 316 NEEPVNLALDKACNSLPDINSDFIDDWDDSCDGCTPGELCEFSSEYTVLEVHE 368
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 2.6
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 448 NWNYFHYSSSAISSTPK 398
+WN+F+Y++SAI S K
Sbjct: 493 DWNFFNYNNSAIDSYAK 509
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 25.8 bits (54), Expect = 3.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 308 TDAILFDECYPDALLKNCHKIGEGVYGEV 394
T + F+E Y +A + HK GE +Y V
Sbjct: 41 TSQLSFEELYRNAYILVLHKYGEKLYNHV 69
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 25.4 bits (53), Expect = 4.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 320 LFDECYPDALLKNCHKIGEGVYGEVF 397
++ YP + +IGEG YG+V+
Sbjct: 267 IYTYTYPKPAYEKIDQIGEGTYGKVY 292
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 25.0 bits (52), Expect = 5.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 281 DYVLRRCNQTDAILFDE 331
DYVL+ C Q + L DE
Sbjct: 224 DYVLKHCEQFEGFLLDE 240
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 368 IGEGVYGEVFLWRARD-GRARVMKIV 442
IG+G +G+V+L R +D R MK++
Sbjct: 272 IGKGTFGQVYLVRKKDTERVYAMKVL 297
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 24.6 bits (51), Expect = 7.9
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 305 QTDAILFDECYPDALLKNCHKIGEGVYGEVFLWRARDGRARVMKIVP 445
Q DA+ F + + KIGE Y EV+ D V K++P
Sbjct: 142 QEDALPFSQFVKSQTFE-IQKIGEASYSEVYQASNADDVPVVWKVIP 187
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 24.6 bits (51), Expect = 7.9
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -2
Query: 457 MTSNWNYFHYS 425
+T +W+YFHYS
Sbjct: 285 VTKSWHYFHYS 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,957,348
Number of Sequences: 5004
Number of extensions: 38433
Number of successful extensions: 132
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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