Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21i11
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces pomb...    25   6.7  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   6.7  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   8.9  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   8.9  

>SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 316

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -2

Query: 194 AEPSFLAWIIKRFVTAFKSYVN 129
           + P  L W+I + +TA +S+++
Sbjct: 294 SSPEALKWLINQLITALRSFID 315


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 17/51 (33%), Positives = 31/51 (60%)
 Frame = -2

Query: 323  SVSTANGVTFANVLSSPRSMGG*LSATMSRGSFRNTTIIEILSAEPSFLAW 171
            +VSTA+G++  +VLSS R++      + S  S R++ + E+ S + S  A+
Sbjct: 3596 TVSTASGISQGSVLSSTRAI-----ESESTASHRSSVLSELSSYDLSTSAF 3641


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 376 PPHLHRLPTQYRPAACMTPSPRRMALRSP 290
           P +  R PTQ   +  M PS  RM  +SP
Sbjct: 500 PSYAPRHPTQANGSRYMNPSTSRMTPQSP 528


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 223  LKDPRDIVADNYPPMDLGLDNTLANVT 303
            +K+P D+V D+    +  L+ T A+VT
Sbjct: 1163 IKEPLDVVTDDNTNSNFSLEETNASVT 1189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,720,758
Number of Sequences: 5004
Number of extensions: 32375
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)