Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21i06
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb... 31 0.20
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 30 0.34
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1... 29 0.60
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 27 3.2
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 26 5.6
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 7.4
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 25 9.7
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 25 9.7
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 25 9.7
>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 30.7 bits (66), Expect = 0.20
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -2
Query: 646 LATVVETIVSKLKLMDFNTSNISRCHRMGKTFTPERSRPILLKLCDMNLRSKVWAAKTSL 467
L TV+ + + D T ++ CH + K+F E S+ L K + W + SL
Sbjct: 373 LLTVLSSNAESFNVSDMQTLGLNPCHSLDKSFVSEISQIWLKKHINWQYGKYFWLRRVSL 432
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 29.9 bits (64), Expect = 0.34
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +1
Query: 142 IKKQ*MTPRTNTTSCSQPHV-LVWSQLQTPLCPCRFVPSFEQHLPA*SSWQEHPDQTSLR 318
++K +TP ++ + P + L+ SQ L P P LP+ S P Q S
Sbjct: 234 VRKSAVTPSSDPYNSPPPSIPLLGSQTNLQLAPSFAAPQAHP-LPSHLSQSNVPPQLS-- 290
Query: 319 HDVAPHPIPERKRSRP 366
H P P P R S+P
Sbjct: 291 HSSVPSPAPPRSVSQP 306
>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 29.1 bits (62), Expect = 0.60
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 269 RCCSKEGTNRQGHKGVCSCDQTKTCGCEQEVVFVLGVIHCFFICYPL 129
+CC G + +G+ K G E ++ GV HCF++ YP+
Sbjct: 269 QCC---GWDPLRDEGIAYEKALKAAGNETRLIVYEGVPHCFWVYYPM 312
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 304 QTSLRHDV--APHPIPERKRSRPESSTWLLR 390
Q SLR D +PHPIP S ES + +LR
Sbjct: 564 QVSLREDYWKSPHPIPPSSYSFVESPSSILR 594
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +1
Query: 292 EHPDQTSLRHDVAPHPIPERKRSRPESSTW 381
+H + S HD P P+P ++P+ W
Sbjct: 224 KHEEHCSCHHDKFPRPVP-HNGTKPDHKPW 252
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +1
Query: 292 EHPDQTSLRHDVAPHPIPERKRSRPESSTW 381
+H + S HD P P+P ++P+ W
Sbjct: 253 KHEEHCSCHHDKFPRPVP-HNGTKPDHKPW 281
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +2
Query: 500 QVHVA*LQKNGPRSFWSKCFTHSVTPGNVRCIKV---HKFQFTDNGF 631
Q H + K +W++ F +V P +V I++ KF+ D GF
Sbjct: 39 QTHTTKVIKKSVNPYWNEGFEVTVKPSSVISIRLFDQKKFKKKDQGF 85
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 529 ILLKLCDMNLRSKVWAAKTSLKGSGITLSEFL 434
I +KL + LRS +WA ++++ +G S L
Sbjct: 245 ITVKLSQLPLRSLLWANESAIVAAGYNYSPIL 276
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 293 SCQDDYAGRCCSKEGTNRQGHKGVCSCDQTKTCGCEQE 180
SC CCS+E KG CS ++T C E++
Sbjct: 246 SCCSSKKPSCCSQE------KKGCCSTEKTSCCSQEKK 277
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 289 AKTTMPEDAAQKRAQTGKDTK-ESAAATRPKRVAANKK 179
AK ED K ++TGKD + +AAA K+ NKK
Sbjct: 83 AKVVKEEDL--KSSETGKDVETAAAAAAAAKKKKKNKK 118
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,448
Number of Sequences: 5004
Number of extensions: 56810
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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