Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21i04
         (475 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   0.41 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.7  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   8.9  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 25.0 bits (52), Expect = 0.41
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 128 ASTILLIWL*CFRLDWK 78
           A T+LL+W+ C+   WK
Sbjct: 177 AGTLLLVWILCYFCIWK 193


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 128 ASTILLIWL*CFRLDWK 78
           A T+ ++W+ C+   WK
Sbjct: 210 AGTLAVVWIMCYFCIWK 226



 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 323 ITFWF*HFSHVFSCVCSLSSV 261
           +T+ +  +SHV   +C LSS+
Sbjct: 520 LTYEYPWWSHVLGWLCGLSSM 540


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 128 ASTILLIWL*CFRLDWK 78
           A T+ ++W+ C+   WK
Sbjct: 263 AGTLAVVWIMCYFCIWK 279



 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 323 ITFWF*HFSHVFSCVCSLSSV 261
           +T+ +  +SHV   +C LSS+
Sbjct: 573 LTYEYPWWSHVLGWLCGLSSM 593


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 181 TE*REEGGILQLQEHVVA 234
           T+ REEG I  L  H VA
Sbjct: 362 TQLREEGWIHHLARHAVA 379


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 251 LATPRFATTCS 219
           LATPR  T CS
Sbjct: 9   LATPRTGTNCS 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,099
Number of Sequences: 438
Number of extensions: 1677
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)