Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21h24
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    58   1e-09
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    30   0.23 
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    30   0.30 
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    28   1.2  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    27   2.1  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    27   2.8  
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    26   4.9  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    26   4.9  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    26   4.9  
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    25   6.5  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    25   8.6  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.6  

>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
 Frame = +1

Query: 229 KRSPDYTKGVFQTLGFKEFHDYLMMSEDERNSEAGKKLLKTSIENMKMATRRYARRQNKM 408
           K SPD+T+G++Q +GFKEF  +     D         +    +E MK++TR+YA+ Q K 
Sbjct: 245 KFSPDFTRGIWQCIGFKEFMPWFEAPSD--------IVFNDCLERMKVSTRQYAKSQKKW 296

Query: 409 FRQRFLEH--PRREVP----LVYELDTTDVTKWDENVKNKAIKIIESFINSTDS 552
            + RFL     ++++     L    +TTD+  W+E V+ KA ++ + F  + D+
Sbjct: 297 IQSRFLPMCLAQQDLSPSSILFSTTNTTDLNNWEEQVE-KACRVFQYFFYNGDA 349


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
 Frame = +1

Query: 289  DYLMMSEDERNSE--AGKKLLKTS--IENMKMATR-RYARRQNKMFR-QRFLEHPRREVP 450
            D L +SE+ER     AG+KL  +   + N K A   +Y+  +N++   Q  L+    E+ 
Sbjct: 677  DELDVSEEEREEAIVAGQKLSASFELMSNEKQALELKYSSLKNELINAQNLLDRREEELS 736

Query: 451  ----LVYELDTTDVTKWDENVKNKAIKIIESFINSTDSDVLPIKQHLQSDKLHTD 603
                 ++E         D+  KNK I ++    NS  +D L   +HL+SDK+  D
Sbjct: 737  ELSKKLFEERKIRSGSNDDIEKNKEINVL----NSELADKLAQIRHLESDKMELD 787


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 331 GKKLLKTSIENMKMATRRYARRQNKMFRQ-RFLEHPRREVPLVYELDTTDVTKWDE 495
           GKK L+ S  +    T+R  R    + R+ +  +   RE+P V  L   ++T W+E
Sbjct: 390 GKKELEASSNDASRLTQRGRRDPGLLLREEKIRKRLSRELPKVQSLLIPEITAWEE 445


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 261 PNSWLQRIPRLPDDVRRRKEFGGGQETTEDQH*KHEDGHPEIRETSKQNVS-SKIFRTSQ 437
           P   L     L D+V RR  FGG +++  +   + E  H   RE   + ++ SK ++  +
Sbjct: 164 PGFGLDEGEELNDEVVRRMHFGGFEDSDAENEKEGEGAHKSKREVMSEIIAKSKHYKAER 223

Query: 438 K 440
           +
Sbjct: 224 Q 224


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1237

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/63 (22%), Positives = 30/63 (47%)
 Frame = +1

Query: 208  VTSSPPHKRSPDYTKGVFQTLGFKEFHDYLMMSEDERNSEAGKKLLKTSIENMKMATRRY 387
            V S P H R     K ++++   ++ H     SE ERN     ++L+   ++ +  ++ +
Sbjct: 1149 VESLPRHSRIKFANKEIYRSGTIRKVHIQTNESELERNERIILRILRMRADSKRFLSKHF 1208

Query: 388  ARR 396
             R+
Sbjct: 1209 QRK 1211


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 460 ELDTTDVTKWDENVKNKAIKIIESFINS 543
           ++ TTD+T+W +N  + A   + SFI+S
Sbjct: 196 KVQTTDITEWVKNWTDVAAGFLISFISS 223


>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 304 SEDERNSEAGKKLLKTSIENMKMATRRYARRQNKMFRQRFLEHPRREVPLVY 459
           S++E +SE   + L   +EN+K   +R    Q +  + R LE  +RE  + +
Sbjct: 157 SDEESDSEDETQQLLRELENIKQERKREQMLQEE--KNRALEQEKREREIAF 206


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +1

Query: 229 KRSPDYTKGVFQTLGFKEF----HDYLMMSEDERNSE 327
           K + D  KG  + L F +     HDY +++EDER S+
Sbjct: 28  KNAIDCFKGKIEFLSFDKVDPTKHDYYLVAEDERVSD 64


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 355 CWSSVVSCPPPNSFRLRTSSGNRGIL*SQEFG 260
           C++  VS  PPN   L+    NR +L ++E G
Sbjct: 227 CYNRAVSAKPPNKSELKKYIWNRSVL-NKEHG 257


>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 160 GKNTGGYRFTRGYCRFVTSSPPHKRSPD 243
           G N+GG  FTRG      SS   ++S D
Sbjct: 19  GLNSGGSSFTRGLKNSTLSSTSSRKSSD 46


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 560 KTSESVLLMKLSIILIALFFT 498
           K SES + + LS++L++ FFT
Sbjct: 258 KPSESFICIVLSMVLVSAFFT 278


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -3

Query: 543 AIDETFYYFNSLVFHVFIPFGY 478
           A+D T+Y  N+L ++++I +G+
Sbjct: 430 ALDVTYYNLNTLSWNLYIEYGH 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,212
Number of Sequences: 5004
Number of extensions: 58098
Number of successful extensions: 198
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)