Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21h24
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0321 + 42715969-42716233,42716320-42716399,42716545-427166... 43 2e-04
07_01_0786 + 6122144-6123187 36 0.025
10_05_0065 + 8736744-8738879 29 2.2
04_04_0642 - 26899426-26899767 29 2.2
01_01_0383 + 2968154-2968197,2969377-2969731 29 2.2
03_03_0015 - 13755971-13756957 29 2.9
02_04_0414 - 22685981-22686178,22686374-22686465,22686580-226866... 29 2.9
11_06_0585 - 25230630-25230743,25230840-25231122,25231203-252313... 29 3.8
11_01_0507 - 3914453-3914989 28 5.0
03_04_0140 + 17638335-17638583,17638843-17639061,17639206-176394... 28 6.6
04_04_1248 - 32051679-32052356,32053617-32053778,32054147-320542... 27 8.7
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726... 27 8.7
>01_07_0321 +
42715969-42716233,42716320-42716399,42716545-42716613,
42716710-42716791,42716902-42716996,42717129-42717203,
42717385-42717436,42717442-42717630,42717667-42717752,
42717827-42717902,42718001-42718164,42718307-42718426
Length = 450
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Frame = +1
Query: 226 HKRSPDYTKGVFQTLGFKEFHD----YLMMSEDERNSEAGKKLLKTSIENMKMATRRYAR 393
+ R YT+G+ Q +G +EF + Y E + + K LL ++ +K TRR R
Sbjct: 270 YDREATYTQGLRQAIGVREFDEFFRFYFARKETGLHDDNLKGLLDEAVSQLKANTRRLVR 329
Query: 394 RQNKMFRQ--RFLEHPRREVPLVYELDTTDVTKWDENVKNKAIKIIESFIN 540
RQ + + ++ E R + W+ V + I+ F++
Sbjct: 330 RQRRRLHRLNKYFEWNLRHIDATEAFYGATADSWNMKVVKPCVDIVRDFLS 380
>07_01_0786 + 6122144-6123187
Length = 347
Score = 35.9 bits (79), Expect = 0.025
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Frame = +1
Query: 241 DYTKGVFQTLGFKEFHDYLMMSEDERNSEAGKKLLKTSIENMKMATRRYARRQN-KMFRQ 417
DY++GV++ +G E YL E +LL +IE++K TR + RQ K+ R
Sbjct: 213 DYSRGVWRAIGVPELDAYLRSCAAAGGEEERARLLANAIEDIKANTRWLSCRQRAKIVRL 272
Query: 418 RFLEHPRR-EVPLVYELDTTDVTK-WDENVKNKAIKIIESFIN 540
L RR + + + W+ +V +I + SF++
Sbjct: 273 DRLWRIRRVDATEAFRRRGGAANEAWERHVAAPSIDTVRSFLH 315
>10_05_0065 + 8736744-8738879
Length = 711
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 271 GFKEFHDYLMMSEDERNSEAGKKLLKTSIE 360
G +EF DY+ E++ + AG KL+K + E
Sbjct: 672 GCEEFFDYIFGDEEDATAAAGFKLMKAAYE 701
>04_04_0642 - 26899426-26899767
Length = 113
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 271 GFKEFHDYLMMSEDERNSEAGKKLLKTSIENMKMATRR-YARRQNKMFRQRFLEHPRREV 447
G H ++D+RN E K L K E MK+ YAR ++ + E R+
Sbjct: 34 GGSRSHGCRSQNKDQRNLE--KNLTKVRKEWMKVKEEMGYARLLSEHLSETVTETDRKVA 91
Query: 448 PLVYELDTTD 477
++ ELD TD
Sbjct: 92 AMLEELDRTD 101
>01_01_0383 + 2968154-2968197,2969377-2969731
Length = 132
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 334 KKLLKTSIENMKMATRRYARRQNKM 408
K +K S++N+K A RRY ++ NK+
Sbjct: 90 KNTIKKSLDNLKHALRRYKKQSNKI 114
>03_03_0015 - 13755971-13756957
Length = 328
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 241 DYTKGVFQTLGFKEFHDYLMMSEDERNSEAG 333
DYT+GV + +G E H YL+ ER AG
Sbjct: 178 DYTRGVRRAIGLPEMHGYLLA---EREGGAG 205
>02_04_0414 -
22685981-22686178,22686374-22686465,22686580-22686676,
22686801-22686916,22687314-22687513,22687588-22687740,
22687960-22688171,22688403-22688519,22688613-22688687,
22688815-22688853,22689518-22689689,22689809-22690056,
22690151-22690324,22690418-22690504
Length = 659
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 262 QTLGFKEF-HDYLMMSEDERNSEAGKKLLKTSIENMKMATRRYARRQNKMFRQRFLEH 432
QT+ F+ F +YL + + GKK LK S+ +K +T N+ + ++ H
Sbjct: 78 QTIEFESFLREYLNLQAKGSSKTGGKKKLKGSVSFLKASTTTLLHVINESEKTSYVNH 135
>11_06_0585 -
25230630-25230743,25230840-25231122,25231203-25231373,
25231451-25232298,25232384-25232812,25232889-25233266,
25233396-25233488
Length = 771
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/67 (22%), Positives = 32/67 (47%)
Frame = +1
Query: 274 FKEFHDYLMMSEDERNSEAGKKLLKTSIENMKMATRRYARRQNKMFRQRFLEHPRREVPL 453
++EFH E SEA ++L ++ ++ T YA +Q++ ++ P+
Sbjct: 59 WEEFHTTKSTPESRAKSEAYRRLQAKNVHPHRLGTGGYAGKQHEWVKEDEATAESNTPPV 118
Query: 454 VYELDTT 474
+ ++ TT
Sbjct: 119 LGDIPTT 125
>11_01_0507 - 3914453-3914989
Length = 178
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 169 TGGYRFTRGYCRFVT 213
TG +RF RGYCR T
Sbjct: 144 TGAFRFARGYCRATT 158
>03_04_0140 +
17638335-17638583,17638843-17639061,17639206-17639443,
17640614-17640809,17640888-17640942,17641495-17641645,
17642501-17642809,17642950-17643215,17643311-17644237,
17644386-17644712
Length = 978
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -2
Query: 343 VVSCPPPNSFRLRTSSGNRGIL*SQEFGKRLWCSLVSVCAVAR 215
VV PP + +R ++ N G + QEF + W S+VS VA+
Sbjct: 64 VVGRMPPRTLSVRCAASN-GRITQQEFTEMAWQSIVSSPEVAK 105
>04_04_1248 -
32051679-32052356,32053617-32053778,32054147-32054269,
32054686-32054793
Length = 356
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -1
Query: 590 LSL*RCCFIGKTSESVLLMKLSIILIALFFTF 495
LS CC++GK ++ L + ++I++ L F
Sbjct: 231 LSFAMCCYVGKATKIFLCLAAALIVVGLVLGF 262
>04_01_0567 -
7263744-7263922,7264020-7264259,7264919-7264982,
7265088-7265393,7265652-7265866,7266195-7266489,
7266596-7266655,7267091-7267717,7268510-7268596,
7269292-7269612,7270051-7270224,7272806-7275022
Length = 1594
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +3
Query: 300 DVRRRKEFGGGQETTEDQH*KHEDGHPEIRETSKQNVSSKIFRTSQKRGAFSLRIG 467
DVR +KE G + +D+ + E+ ++ ET K +RG + +G
Sbjct: 661 DVRGKKENEEGDDNEDDEEGEEEEEEKDVEETPVLETVLKGINIEVRRGELAAVVG 716
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,611,670
Number of Sequences: 37544
Number of extensions: 360867
Number of successful extensions: 908
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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