Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21h24
(605 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13642-2|AAG00042.2| 430|Caenorhabditis elegans Abnormal growth... 59 2e-09
AY052773-1|AAL14112.1| 430|Caenorhabditis elegans tRNA isopente... 59 2e-09
Z81072-8|CAE17783.1| 143|Caenorhabditis elegans Hypothetical pr... 30 1.5
U40938-4|AAK68283.1| 447|Caenorhabditis elegans Cyclophilin fam... 29 2.6
U40938-3|AAA81696.1| 466|Caenorhabditis elegans Cyclophilin fam... 29 2.6
U31078-1|AAC47130.1| 466|Caenorhabditis elegans cyclophilin iso... 29 2.6
Z72512-1|CAA96663.2| 326|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical pr... 27 7.9
U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein. 27 7.9
>U13642-2|AAG00042.2| 430|Caenorhabditis elegans Abnormal growth
rate protein 1 protein.
Length = 430
Score = 59.3 bits (137), Expect = 2e-09
Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Frame = +1
Query: 253 GVFQTLGFKEFHDYLMMSEDERNSEAGKKLLKTSIENMKMATRRYARRQNKMFRQRFLEH 432
GV Q +G KEF +L + ER++ G KL K +++K+ TR+YARRQ + +R R L+
Sbjct: 274 GVMQCIGLKEFVPWLNLDPSERDTLNGDKLFKQGCDDVKLHTRQYARRQRRWYRSRLLKR 333
Query: 433 P--RREVPLVYELDTTDVTKWDENVKNKAIKIIESFINSTD 549
R++ LDT+D K+ + + + I++ ++N D
Sbjct: 334 SDGDRKMASTKMLDTSD--KY--RIISDGMDIVDQWMNGID 370
>AY052773-1|AAL14112.1| 430|Caenorhabditis elegans tRNA isopentenyl
transferase protein.
Length = 430
Score = 59.3 bits (137), Expect = 2e-09
Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Frame = +1
Query: 253 GVFQTLGFKEFHDYLMMSEDERNSEAGKKLLKTSIENMKMATRRYARRQNKMFRQRFLEH 432
GV Q +G KEF +L + ER++ G KL K +++K+ TR+YARRQ + +R R L+
Sbjct: 274 GVMQCIGLKEFVPWLNLDPSERDTLNGDKLFKQGCDDVKLHTRQYARRQRRWYRSRLLKR 333
Query: 433 P--RREVPLVYELDTTDVTKWDENVKNKAIKIIESFINSTD 549
R++ LDT+D K+ + + + I++ ++N D
Sbjct: 334 SDGDRKMASTKMLDTSD--KY--RIISDGMDIVDQWMNGID 370
>Z81072-8|CAE17783.1| 143|Caenorhabditis elegans Hypothetical
protein F30A10.12 protein.
Length = 143
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +3
Query: 282 IPRLPDDVRRRKEFGGGQETTEDQH*KHEDGHPEIRETSKQNVSSKIFRTSQKRGAFS 455
I P DV + K+ G ++ E + K E+ E +ETSK+ S K + S K+ + S
Sbjct: 60 ISTAPGDVSKEKDKGNEEKKEEKKDEKEEEKKDEKKETSKK--SKKASKKSVKKSSKS 115
>U40938-4|AAK68283.1| 447|Caenorhabditis elegans Cyclophilin family
protein 8, isoformb protein.
Length = 447
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/67 (23%), Positives = 28/67 (41%)
Frame = +3
Query: 267 SWLQRIPRLPDDVRRRKEFGGGQETTEDQH*KHEDGHPEIRETSKQNVSSKIFRTSQKRG 446
+WL R + P+ +K+ G+E D+ + D H R + ++ S R R
Sbjct: 208 NWLMRYSKSPESREEKKKDKHGREEKRDRRRRSNDRHGRDRRSRSRSQSRDRNRRRDDRS 267
Query: 447 AFSLRIG 467
R+G
Sbjct: 268 GRDGRVG 274
>U40938-3|AAA81696.1| 466|Caenorhabditis elegans Cyclophilin family
protein 8, isoforma protein.
Length = 466
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/67 (23%), Positives = 28/67 (41%)
Frame = +3
Query: 267 SWLQRIPRLPDDVRRRKEFGGGQETTEDQH*KHEDGHPEIRETSKQNVSSKIFRTSQKRG 446
+WL R + P+ +K+ G+E D+ + D H R + ++ S R R
Sbjct: 208 NWLMRYSKSPESREEKKKDKHGREEKRDRRRRSNDRHGRDRRSRSRSQSRDRNRRRDDRS 267
Query: 447 AFSLRIG 467
R+G
Sbjct: 268 GRDGRVG 274
>U31078-1|AAC47130.1| 466|Caenorhabditis elegans cyclophilin
isoform 8 protein.
Length = 466
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/67 (23%), Positives = 28/67 (41%)
Frame = +3
Query: 267 SWLQRIPRLPDDVRRRKEFGGGQETTEDQH*KHEDGHPEIRETSKQNVSSKIFRTSQKRG 446
+WL R + P+ +K+ G+E D+ + D H R + ++ S R R
Sbjct: 208 NWLMRYSKSPESREEKKKDKHGREEKRDRRRRSNDRHGRDRRSRSRSQSRDRNRRRDDRS 267
Query: 447 AFSLRIG 467
R+G
Sbjct: 268 GRDGRVG 274
>Z72512-1|CAA96663.2| 326|Caenorhabditis elegans Hypothetical
protein R07B5.3 protein.
Length = 326
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 19 YEMCILFFIYY-KIFLRTQNINKKPSATL*I*CQQISIAYRRFQFNISGKNTGG 177
Y++CILF +++ +++ P+ T + C Q+ Y++ I+ N G
Sbjct: 146 YQLCILFLVFWGPATYVLSSVSAFPNITSKVVCMQLDFPYQKGAITITTDNVYG 199
>Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical
protein T23G11.3 protein.
Length = 463
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -2
Query: 376 WPSSCFQCWSSVVSCPPPNSFRLRTSSGNRGIL 278
WPS+ WSS V PPP RL S+ NR I+
Sbjct: 55 WPSTRRDGWSS-VRAPPP--ARLTLSTNNRHIM 84
>U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein.
Length = 463
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -2
Query: 376 WPSSCFQCWSSVVSCPPPNSFRLRTSSGNRGIL 278
WPS+ WSS V PPP RL S+ NR I+
Sbjct: 55 WPSTRRDGWSS-VRAPPP--ARLTLSTNNRHIM 84
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,662,829
Number of Sequences: 27780
Number of extensions: 324879
Number of successful extensions: 950
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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