Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21h23
         (531 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   199   1e-51
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   198   2e-51
04_01_0377 - 4970034-4970687                                           27   9.4  
03_02_0480 + 8785130-8785192,8785472-8785518,8786415-8786508,878...    27   9.4  

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  199 bits (486), Expect = 1e-51
 Identities = 95/150 (63%), Positives = 114/150 (76%), Gaps = 2/150 (1%)
 Frame = +2

Query: 41  MKLNVSYPATGCQKLFEVVDXHKLXIFYKKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 220
           MK N++ P TGCQK  E+ D  KL  FY KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 221 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 394
           FPMKQGVLT+ RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120

Query: 395 QEIPGLTDGNVPRRLGPKRASKIRKLFNLS 484
            ++PGLTD   PR  GPKRASKIRKLFNL+
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLA 150


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  198 bits (483), Expect = 2e-51
 Identities = 95/150 (63%), Positives = 113/150 (75%), Gaps = 2/150 (1%)
 Frame = +2

Query: 41  MKLNVSYPATGCQKLFEVVDXHKLXIFYKKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 220
           MK N++ P TGCQK  E+ D  KL  F+ KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 221 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 394
           FPMKQGVLT  RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120

Query: 395 QEIPGLTDGNVPRRLGPKRASKIRKLFNLS 484
            ++PGLTD   PR  GPKRASKIRKLFNLS
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLS 150


>04_01_0377 - 4970034-4970687
          Length = 217

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +1

Query: 328 SSWMYC*RQSLGLGSCYCAQGCPGNSWID*WKCTPPSRSQTCFQN 462
           S W YC     GLGS +C  GC   +     +C   +    C  N
Sbjct: 123 SQWGYC-----GLGSEFCGNGCQSGACCPEKRCGKQAGGDKCPNN 162


>03_02_0480 +
           8785130-8785192,8785472-8785518,8786415-8786508,
           8786598-8786699,8786988-8787259,8787343-8787420,
           8787648-8787894
          Length = 300

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = -2

Query: 362 PRDWRQQYIHELIYVFSLHRGAVCNMSGPLTSEDEHGCL 246
           PR W+        Y    HRGA       +  E +HG +
Sbjct: 204 PRKWKTNKGQVFFYCLKRHRGASKKQGASMVEEVDHGTM 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,622,503
Number of Sequences: 37544
Number of extensions: 321414
Number of successful extensions: 881
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)