Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21h22
(474 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 140 7e-35
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 72 4e-14
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 54 1e-08
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 52 4e-08
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 52 6e-08
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 49 4e-07
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 46 2e-06
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 44 2e-05
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 31 0.068
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 31 0.090
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 27 1.1
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 27 1.5
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 25 5.9
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 5.9
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 25 7.8
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 25 7.8
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 25 7.8
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb... 25 7.8
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 140 bits (340), Expect = 7e-35
Identities = 59/98 (60%), Positives = 76/98 (77%)
Frame = +3
Query: 171 PTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCFSDTETLCND 350
P WVH +F+GTLTSET+CL CE ++S+DE F DL +D+ +TS+T CL+ FS +E L +
Sbjct: 227 PKWVHSLFEGTLTSETKCLTCENITSRDESFLDLSIDIENHTSVTSCLRSFSASEMLSSK 286
Query: 351 NKFKCDNCSSYXEAQKRMRVKKLPLILALHLKRFKYME 464
NKF CD C S EA+KRM++KKLP IL+LHLKRFKY E
Sbjct: 287 NKFHCDVCKSLQEAEKRMKIKKLPKILSLHLKRFKYNE 324
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 72.1 bits (169), Expect = 4e-14
Identities = 35/97 (36%), Positives = 52/97 (53%)
Frame = +3
Query: 168 EPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCFSDTETLCN 347
E + VH IF G L + C C+ S+ + DL VD + +S+ LK F E L
Sbjct: 243 ETSVVHRIFGGYLRQQILCSVCKKPSNTYQALLDLSVDA-KGSSLADSLKHFVHAEKLTK 301
Query: 348 DNKFKCDNCSSYXEAQKRMRVKKLPLILALHLKRFKY 458
NK++C+NC +A K+M + + P IL +H KRF +
Sbjct: 302 QNKYRCENCKQLVDASKQMTIYRAPNILTIHFKRFTF 338
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 54.0 bits (124), Expect = 1e-08
Identities = 29/93 (31%), Positives = 50/93 (53%)
Frame = +3
Query: 180 VHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCFSDTETLCNDNKF 359
+++IF G + S +C++ SS+ E F+D+Q++V ++ + ETL DNK+
Sbjct: 336 LNDIFVGKMKSYVKCIDVNYESSRVEDFWDIQLNVKGMDTLEDSFRDAIQVETLTGDNKY 395
Query: 360 KCDNCSSYXEAQKRMRVKKLPLILALHLKRFKY 458
+ +A K + + LP +L L LKRF Y
Sbjct: 396 YAEG-HGLQDAHKGIIFESLPNVLQLQLKRFDY 427
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 52.0 bits (119), Expect = 4e-08
Identities = 28/90 (31%), Positives = 48/90 (53%)
Frame = +3
Query: 189 IFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCFSDTETLCNDNKFKCD 368
+F G + S C+N S++ E ++D+Q++V ++ + + ETL DN + D
Sbjct: 322 LFVGKMKSYIACVNVNFESARSEDYWDIQLNVKGMKNLEDSFRSYIQVETLEGDNCYFAD 381
Query: 369 NCSSYXEAQKRMRVKKLPLILALHLKRFKY 458
+ EA+K + + P IL L LKRF+Y
Sbjct: 382 T-YGFQEAKKGVIFESFPPILHLQLKRFEY 410
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 51.6 bits (118), Expect = 6e-08
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Frame = +3
Query: 192 FQGTLTSETRCLNCETVSSKDEHFFDLQV---DVGQNTSITHCLKCFSDTETLCNDNKFK 362
F G L S T+C+ C S+ F L + DV S+ CL FS E L + +
Sbjct: 229 FVGQLCSRTQCMTCGRTSTTFAPFTSLAIPIDDVSHVVSLQECLLKFSAPELLQGHDGWH 288
Query: 363 CDNCSSYXEAQKRMRVKKLPLILALHLKRFK 455
C C A+K + + KLP L + ++RFK
Sbjct: 289 CPVCKVQRSAKKVIMISKLPEYLIIQIQRFK 319
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 48.8 bits (111), Expect = 4e-07
Identities = 27/92 (29%), Positives = 48/92 (52%)
Frame = +3
Query: 180 VHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCFSDTETLCNDNKF 359
+H IF G+L + CL+C+ + D+ +D+ + T + CL+ F E + ++
Sbjct: 261 IHRIFSGSLKNVVTCLDCKKERVAVDPLMDISLDINEPT-LQGCLERFVSKEKV----QY 315
Query: 360 KCDNCSSYXEAQKRMRVKKLPLILALHLKRFK 455
C +C S A K++ KLP + + LKRF+
Sbjct: 316 SCHSCGS-KNAIKQLVFDKLPPTICMQLKRFE 346
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 46.4 bits (105), Expect = 2e-06
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 297 SITHCLKCFSDTETLCNDNKFKCDNCSSYXEAQKRMRVKKLPLILALHLKRFKYMEQF 470
++ CL F TE L ++ + C C + +A K+M + + P IL HLKRF +F
Sbjct: 826 TLNDCLDEFEKTEQLGEEDPWYCPTCKEFRQASKQMEIWRCPEILIFHLKRFSSERRF 883
Score = 25.0 bits (52), Expect = 5.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 186 EIFQGTLTSETRCLNCETVSSKDEHFFDL 272
++FQG S C C TVS + F DL
Sbjct: 461 DLFQGMYRSTLVCPVCNTVSITFDPFMDL 489
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +3
Query: 288 QNTSITHCLKCFSDTETLCNDNKFKCDNCSSYXEAQKRMRVKKLPLILALHLKRF 452
++ ++ CL FS E L + + C C ++ A KR+ + +LP IL +HL RF
Sbjct: 688 ESITLEDCLLEFSKPEQLDLQDSWYCPGCKAFRPATKRLEIWRLPKILVIHLNRF 742
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 31.5 bits (68), Expect = 0.068
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Frame = +3
Query: 180 VHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNT--SITHCLKCFSDTETLCNDN 353
+ +IF G L S R + S E F LQ+D+ S+ L+ + E L +
Sbjct: 310 ISQIFGGQLRSTLRVPSARD-SVLLEPFQPLQLDIQAEDIHSVIDALEHMTAPEILPEWH 368
Query: 354 KFKCDNCSSYXEAQKRMRVKKLPLILALHLKRFKY 458
K + A K+M ++ LP +L LHLKRF Y
Sbjct: 369 SSKGN-----VTATKQMYIESLPPVLILHLKRFFY 398
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 31.1 bits (67), Expect = 0.090
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 297 SITHCLKCFSDTETLCNDNKFKCDNC 374
++ CLK F+ E L +N F C+NC
Sbjct: 675 TLIDCLKNFTHVEELSGENMFACENC 700
Score = 28.7 bits (61), Expect = 0.48
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 339 LCNDNKFKCDNCSSYXEAQKRMRVKK-LPLILALHLKRF 452
L +DN N S Y A KRM + LP + +HLKRF
Sbjct: 715 LTSDNDKYSFNNSVYRNAYKRMLLDDPLPPVFIIHLKRF 753
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 27.5 bits (58), Expect = 1.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 219 SSRLLMFLGIFRAPKSVQCCEALNHYTSHSHRSCSFE 109
+S +++F+ I + P + C E LN S +R SFE
Sbjct: 531 TSSIIIFISILKRPLASICSEDLNCLISVKNRLISFE 567
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 27.1 bits (57), Expect = 1.5
Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Frame = +3
Query: 342 CNDNKFKCDNCSSYXEA---QKRMRVKK 416
CN KC NC Y E KR RVKK
Sbjct: 21 CNGELPKCQNCVVYSETCKYNKRKRVKK 48
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.0 bits (52), Expect = 5.9
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 12 MLIYSYLNGHLFCQLLIETLFLTAERNQSTLKVQKNNSGENVTCNG 149
MLI Y+NGH + Q +E + + S +Q N G+ V +G
Sbjct: 677 MLIREYVNGHGYSQHALE---MALQILSSKETIQLRNGGQTVYRSG 719
>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 364
Score = 25.0 bits (52), Expect = 5.9
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = +3
Query: 267 DLQVDVGQNTSITH---CLKCFSDTE 335
++ +DVG NT +TH C F DTE
Sbjct: 152 EMLIDVGGNTHLTHRDVCKDGFLDTE 177
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 24.6 bits (51), Expect = 7.8
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -1
Query: 177 KSVQCCEALNHYTSHSHRSCSFELLMCFDYVPLSERGFQLATGKINVHLNNCKLT 13
KS Q +H TSHS S +F+ ++ + + R +Q GK L K+T
Sbjct: 678 KSSQDATIDHHLTSHSPESIAFKAVLAKFFANKTAR-YQEKLGKAEFKLRVKKMT 731
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 24.6 bits (51), Expect = 7.8
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +3
Query: 210 SETRCL--NCETVSSKDEHFFDLQVDVGQ---NTSITHCLKCFSDTETL 341
S +CL +C+ V +E L+ + N +++C KCFS+ E +
Sbjct: 1031 SVVKCLWASCDMVLPSEEFEMHLRGHLNNIRLNCEVSNCKKCFSNYEDM 1079
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 24.6 bits (51), Expect = 7.8
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 84 ERNQSTLKVQKNNSGENVTCNGSVPHNTEPTWVHEIFQGTLTSE-TRCLNCETVSSKDE 257
E+ + + K+QK+ T NGSV N E + + T E TRC+ C V S DE
Sbjct: 11 EKEEESEKIQKSPVDTPHTPNGSVSDNEEN-------ETSSTGEVTRCV-CGIVESDDE 61
>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 339
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 24 SYLNGHLFCQLLIETLFLTAE 86
+YL+ +LF +LL+ TL TAE
Sbjct: 150 NYLSHYLFTELLLPTLRRTAE 170
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,656,981
Number of Sequences: 5004
Number of extensions: 29543
Number of successful extensions: 101
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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