Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21h18
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           29   0.39 
SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|c...    27   1.6  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   2.8  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    25   8.5  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.5  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   8.5  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    25   8.5  

>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 94  VACLRFRHFKNYKNLIF*ISLD*FEN 17
           ++C RF   K Y NL+F  SLD +EN
Sbjct: 94  ISCRRFNFEKEYWNLVFEPSLDLYEN 119


>SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 222

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 446 VSNSHHHPCPSLNKEKPKTSKAEHNTML 363
           + N+HH    SL++  PK  K EH T +
Sbjct: 1   MENNHHLAKDSLDELNPKRGKGEHETQV 28


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 552 QWGIQSRPSPLAPNVTTDMIPEKPPITNTVP 460
           Q G+  +P    P+VT + +  +P I +TVP
Sbjct: 758 QSGVVQQPYQTQPSVTNNNVATQPVIASTVP 788


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 251 WYDTVFNSCWWIFEEEFYI 307
           WY    NSCW +F+ E ++
Sbjct: 185 WYFRYINSCWPLFDLENFM 203


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 446 VSNSHHHPCPSLNKEKPKTSKAEHNT 369
           ++N   +P PS  +E P TSK+   T
Sbjct: 349 ITNDKMYPSPSFQEEFPSTSKSPSAT 374


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +2

Query: 194  FLKIGLWEVCFNKFEDVHHWYDTVFNSCWWIFEEEFYIIHDILLPG 331
            F K  + E    K EDV HW  +  +     F  E Y +   LL G
Sbjct: 1225 FYKKNISEFEREKVEDVAHWAQSSLSEMAKCFHAELYKLWVCLLEG 1270


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/31 (25%), Positives = 20/31 (64%)
 Frame = +3

Query: 213 GKYVSTNSKTFITGTIPSLTAAGGYLKKNSI 305
           G+Y++ + +  +  ++P+L ++G Y+ K  I
Sbjct: 228 GRYMTQHLQNLLRESLPTLKSSGQYVSKEDI 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,541
Number of Sequences: 5004
Number of extensions: 40222
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)