Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21h15
(459 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 186 2e-48
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 182 2e-47
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 99 3e-22
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 92 3e-20
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 27 1.0
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 26 3.2
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 3.2
SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces pombe... 26 3.2
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 25 4.2
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 25 5.6
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 25 5.6
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|... 25 7.3
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 24 9.7
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 24 9.7
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as... 24 9.7
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 186 bits (452), Expect = 2e-48
Identities = 82/133 (61%), Positives = 105/133 (78%)
Frame = +3
Query: 57 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDPNTADSCFNTFFSEADRG 236
MRE IS+HVGQAG Q+G ACW+LYCLEHGI+P+G + ET +D F+TFFSE +G
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNP-ETASQNSDGGFSTFFSETGQG 59
Query: 237 KMVPRVVMVDLXATVIDEVRSGEYRQLYHPEQLITGKEDAANNYARGHYSTGREVLSPVM 416
K VPR + VDL VID+VR+G YR L+HPEQLITGKEDA+NNYARGHY+ G+E++ V
Sbjct: 60 KYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVT 119
Query: 417 ERIRKLADQCTGL 455
++IR++AD C+GL
Sbjct: 120 DKIRRIADNCSGL 132
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 182 bits (444), Expect = 2e-47
Identities = 83/136 (61%), Positives = 104/136 (76%), Gaps = 3/136 (2%)
Frame = +3
Query: 57 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDG-TLPACETDPNTA--DSCFNTFFSEA 227
MRE ISVHVGQAGVQ+G ACW+LYCLEHGI PDG E N + + F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 228 DRGKMVPRVVMVDLXATVIDEVRSGEYRQLYHPEQLITGKEDAANNYARGHYSTGREVLS 407
+GK VPR + VDL VID+VR+G Y+ L+HPEQ++TGKEDA+NNYARGHY+ G+E++
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 408 PVMERIRKLADQCTGL 455
V+ERIR++AD C+GL
Sbjct: 121 SVLERIRRMADNCSGL 136
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 99.1 bits (236), Expect = 3e-22
Identities = 48/133 (36%), Positives = 73/133 (54%)
Frame = +3
Query: 57 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDPNTADSCFNTFFSEADRG 236
MRE + + GQ G Q+G A W EHG+ G + N +F+EA G
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHER---LNVYFNEAAGG 57
Query: 237 KMVPRVVMVDLXATVIDEVRSGEYRQLYHPEQLITGKEDAANNYARGHYSTGREVLSPVM 416
K VPR V+VDL +D V+SG++ L+ P+ +I G+ A N +A+GHY+ G E+ V+
Sbjct: 58 KYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVL 117
Query: 417 ERIRKLADQCTGL 455
+ +R+ A+ C L
Sbjct: 118 DVVRREAEACDAL 130
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 92.3 bits (219), Expect = 3e-20
Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 2/129 (1%)
Frame = +3
Query: 60 RECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDPNTADSCFNTFFSEADRGK 239
RE I++ GQ G Q+G WQ CLEHGI PDGTL + T+ + FF ++D +
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRK---DVFFYQSDDTR 59
Query: 240 MVPRVVMVDLXATVIDEVRSGEYRQLYHPEQLITGKE--DAANNYARGHYSTGREVLSPV 413
+PR +++DL V++ + S Y LY+PE ++ K A NN+A G YS + +
Sbjct: 60 YIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDI 118
Query: 414 MERIRKLAD 440
M+ I + AD
Sbjct: 119 MDMIDREAD 127
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 27.5 bits (58), Expect = 1.0
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = -3
Query: 319 YSWRYSPERTSSITVAXKSTITTLGTIFPRSASEKNVLKQESAVLGSVSQAGRVPSGRIP 140
Y+ Y P T +++ STI+TL T+ S ++ K S G++++ + SG +
Sbjct: 167 YTSTYLPNSTIDLSILPHSTISTLSTVSINDTS-ASLSKTTSPTAGTITET--IVSGSVG 223
Query: 139 CSKQYSCQHAT 107
+ + T
Sbjct: 224 YTSTFPASGTT 234
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 25.8 bits (54), Expect = 3.2
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = -3
Query: 331 CSG*YSWRYSPERTSSITVAXKSTITTLGTIFPRSASEKNVLKQESAVLGSVSQAGRVPS 152
C+ S R +R S + VA + + L I P KN+L + + V+ G V
Sbjct: 424 CNSLSSVRKLGKRKSIVIVAEGAIDSELNHISPEDI--KNLLVERLHLDTRVTTLGHVQR 481
Query: 151 GRIPCS 134
G IPC+
Sbjct: 482 GGIPCA 487
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 25.8 bits (54), Expect = 3.2
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +3
Query: 288 EVRSGEYRQLYHPEQLITGKEDAANNYARGHYSTGREVLSPV 413
EVR + + E LI GK+ Y R H EVL PV
Sbjct: 1010 EVRGSQMIDTFSTELLIPGKQRVQRTYRRTH-----EVLEPV 1046
>SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 25.8 bits (54), Expect = 3.2
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -1
Query: 180 QFHKRAGFRQVGSRAPSSIAASTRRPSGPRLGP 82
+ HKR GF + S+A+ T R GP
Sbjct: 186 KLHKRQGFIDINFEVSGSLASGTVHYQSQRFGP 218
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.4 bits (53), Expect = 4.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 412 LWSELGNLPINVPDY 456
LWSELG P +VP Y
Sbjct: 207 LWSELGVEPADVPQY 221
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 25.0 bits (52), Expect = 5.6
Identities = 7/23 (30%), Positives = 14/23 (60%)
Frame = -2
Query: 242 HLPSISLRKKRIEAGIRCIRISF 174
H PS+ + ++R E +RC + +
Sbjct: 884 HFPSLGILERRFEGQLRCFHMGY 906
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 5.6
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +3
Query: 165 PACETDPNTADSCFNTFFSEADRGKMVPRVVMVDLXATVIDEVRSG--EYRQLY--HPEQ 332
P+ DP +S +E +G+ ++DL + +DE R+ E+ + + P Q
Sbjct: 4 PSFHEDPTKDESTV----AEQRKGQSNEEKPLIDLNDS-LDEQRNAYNEHCKNHDQQPSQ 58
Query: 333 LITGKEDAANNYARGHYSTGREVLS 407
+ ED AN Y + S+ +EV++
Sbjct: 59 QVRNMEDEANQYEQTDSSSDQEVMN 83
>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 126
Score = 24.6 bits (51), Expect = 7.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 56 YEGVHIRTRGPSRGPDGRRV 115
+ + +RT+ P R PDGR V
Sbjct: 62 HHAIIVRTKSPVRRPDGRYV 81
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 24.2 bits (50), Expect = 9.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 153 DGTLPACETDPNTADSCFNTFFSEAD 230
D +LP D N CFN++ SEAD
Sbjct: 189 DPSLPLL--DSNAVVECFNSYQSEAD 212
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 24.2 bits (50), Expect = 9.7
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -2
Query: 263 NHHDPRHHLPSISLRKKRIEAGIRCIRISFTSGQGSVRSDPV 138
+HH HH S S K E + I+ T+ +DPV
Sbjct: 553 SHHKHHHHKKSKSSSSKHKENDKASVSITTTTTPSITPADPV 594
>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
associated subunit Sfc1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 24.2 bits (50), Expect = 9.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -2
Query: 104 HLDPGLAHVYGYALPHI 54
HLDP H +ALP++
Sbjct: 243 HLDPSYTHYLKFALPYL 259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,364
Number of Sequences: 5004
Number of extensions: 39073
Number of successful extensions: 147
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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