Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21h08
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    28   0.96 
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   6.8  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    25   6.8  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   9.0  

>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 27.9 bits (59), Expect = 0.96
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
 Frame = +2

Query: 122 PLSSGSDTRIIGGSPTTIERYPY---TVQVLYNGQLSCGGSLITKRHVLSAGHCFIDT-N 289
           PLS GS T  + G  T +   PY   +   +     S G + ++   V ++GH   +T  
Sbjct: 335 PLSVGSTTAYLYGQETELLSTPYCHTSYPAMSRLNSSSGYTCVSSSSVTNSGHTENNTWR 394

Query: 290 GNVASPTLFSIRSGSSVLYSGGS 358
            +  S     I S S  L+S G+
Sbjct: 395 SDEQSKGFVDINSFSQSLFSNGN 417


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +2

Query: 218 LSCGGSLITKRHVLSAGHCFIDTNGNVASPTLFSIRSG--SSVLYSGGSIHSVSMIIVHE 391
           ++  GS    + +L+   CF  + G   SPT   I +     +L+ G +I     +    
Sbjct: 517 VAVNGSYTQTKEILAKITCFCSSIGLTVSPTKTKITNSYTDKILFLGTNISHSKNVTFSR 576

Query: 392 RYNVPIRDNDIAVLVLSSPV 451
            + +  R++    ++LS+P+
Sbjct: 577 HFGILQRNS--GFILLSAPM 594


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 101 TIAAVPLPLSSGSDTRIIGGSPTTI 175
           T  +VP P SS +   ++ G  TTI
Sbjct: 313 TATSVPAPYSSAASVNVVPGHATTI 337


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 107 AAVPLPLSSGSDTRIIGGSPTTIERYPY 190
           +AVP    S  DT ++G SP      PY
Sbjct: 519 SAVPHRKVSAQDTNLMGSSPGMYNHMPY 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,194
Number of Sequences: 5004
Number of extensions: 39852
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)